Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J15
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 0.84
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 30 1.1
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635... 29 1.5
06_03_0106 + 16702019-16702600 29 2.6
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739... 29 2.6
06_01_1178 + 10131844-10131993,10132103-10132171,10132446-101324... 27 5.9
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 27 7.8
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.3 bits (65), Expect = 0.84
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 152 TVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEE 256
T +L+KE DEY ++S + TE K ++FEEE
Sbjct: 477 TAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEE 511
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -1
Query: 370 RSELPDVSDLQTVGSLLYLLQDVAFKSAYRLHLDTISAFLFEFFTRLELHLRGLECRRGD 191
R + +VS GS L+ + S YR +D++ AFL F L L+G+ +R
Sbjct: 1056 RLSIQNVSIQHLSGSSAPCLRSLHVFSIYR-RIDSLEAFLKSFKFLSTLDLQGISIKRLP 1114
Query: 190 EIVFVTF 170
+IVF F
Sbjct: 1115 KIVFDLF 1121
>08_02_1457 + 27260841-27260965,27261126-27261246,27263455-27263543,
27263776-27263860,27263970-27264074,27264446-27264527,
27264573-27264686,27265029-27265330,27265519-27266114,
27266216-27266376,27266489-27266592,27266697-27266856,
27266942-27267105,27267213-27267545,27267640-27267930,
27268276-27268359,27268430-27268563,27268665-27268892,
27268993-27269164,27269263-27269517,27269778-27270047
Length = 1324
Score = 29.5 bits (63), Expect = 1.5
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = -1
Query: 442 WYLLNLVDPGASHVLGCHYSFQLFRSELPDVSDL--QTVGSLL--YL-LQDVAFKSAYRL 278
W + +P A V G +S R+EL V QTV L YL LQD F L
Sbjct: 1241 WRWVYWANPAAWTVYGLMFSQLGDRTELIQVPGQPEQTVKEFLEGYLGLQDRYFNLVTSL 1300
Query: 277 HLDTISAFLFEFFTRLELHLR 215
H+ I+ F F FF ++ HL+
Sbjct: 1301 HVAIIALFTFLFFLSIK-HLK 1320
>06_03_0106 + 16702019-16702600
Length = 193
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 178 VTFLAQLHGWGHSISRLAGDQSHTECLHEIVEVL 77
VT HGW H + R+ S +C+ E E L
Sbjct: 81 VTAFCPHHGWTHHLRRVISPPSSPDCMPETPETL 114
>02_04_0525 -
23672984-23673085,23673315-23673419,23673820-23673979,
23674085-23674162,23674383-23674524,23674641-23674785,
23674888-23674950,23675042-23675101,23675364-23675441,
23675524-23675598,23675744-23675860,23675960-23676190,
23676300-23676419,23676512-23676588,23676669-23676769,
23676844-23676950,23677094-23677251,23677383-23677599
Length = 711
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 23 NLPLAMDFIGKKYKMTTSENFDDFMKALGVGLITRKAANAVTPTVELRKEGD 178
N+PL D + MTTS+ D V I K A+ V TV+ RKE D
Sbjct: 97 NVPLGSDHPIRIQTMTTSDTKDVAKTVEEVMRIADKGADFVRITVQGRKEAD 148
>06_01_1178 +
10131844-10131993,10132103-10132171,10132446-10132451,
10132571-10132930,10133983-10134201,10134905-10135054
Length = 317
Score = 27.5 bits (58), Expect = 5.9
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = +2
Query: 122 TRKAANAVTPTVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERADGVKVKSVCTFEG 301
+R+A+ TP + EG + V S + + + PGE ++ AD G
Sbjct: 59 SRRASMVYTPAPAKKIEGSDLKSVKSPQSVSVKKRRDPGETGKKSTADSNGENGAVAPVG 118
Query: 302 NILKQIQKAADGLEVTYIREFGPEELKAVMTAKD 403
+L K D E+ +RE EEL+ + K+
Sbjct: 119 -LLGGENKPKDKDEIVLLRE-QIEELQKTLLEKE 150
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 27.1 bits (57), Expect = 7.8
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -2
Query: 234 GLNFISVVLNVEEVTKLYSSPSLRSSTVGVTALAALRVISPTPSAFMKSSKFSDVVILYF 55
G+ F S++L E +T L + T+G+T L A + + F KS+K+S F
Sbjct: 438 GVGFFSLILFGEPLTPLMA-------TLGMTPLLAAVYVGAMQNIFSKSAKYS-----LF 485
Query: 54 LPMKSMA 34
P K MA
Sbjct: 486 DPCKEMA 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,926
Number of Sequences: 37544
Number of extensions: 279106
Number of successful extensions: 722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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