Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J15
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         31   0.64 
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   1.5  
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_52242| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_12561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_20198| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 148 GHSISRLAGDQSHTECLHEIVEVLGCGH 65
           GH  +R  GD   ++C+ +I + L CGH
Sbjct: 372 GHPCARKCGDTCTSKCIEKIEKTLPCGH 399


>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 672

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 149 PTVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERADGVKVK 280
           P  +L +EGDE    +  T KTTE K   G+    ER+    VK
Sbjct: 46  PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERSKTGHVK 89


>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 173 GDEYNFVTSSTFKTTEMKFKPGEEFEEERADGVKVKSVCTFEGNILKQIQKAADGLEVT 349
           G   NFV+    +   ++F   E       +GVK +S+  FE  +     KA + LEVT
Sbjct: 408 GSGRNFVSREVIRKLNLRFVRHESRHIVTVNGVKKQSMPVFEIEMNSVDGKARENLEVT 466


>SB_52242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 293 FEGNILKQIQKAADGLEVTYIRE 361
           F  N+L+ I K+  G E++YIRE
Sbjct: 31  FNNNVLEAIYKSTGGKEISYIRE 53


>SB_12561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 149 PTVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERA 262
           P  +L +EGDE    +  T KTTE K   G+    ER+
Sbjct: 46  PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERS 83


>SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 55  EIQDDHIRELRRFHEGTRCGTDHPQGG*CCDPN 153
           +I+D+ I+  RR   G +C  D  +GG C  P+
Sbjct: 35  DIEDERIKRNRRVVCGCQCEIDKKEGGGCVVPS 67


>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 236 GEEFEEERADGVKVKSVCTFEG 301
           G+E E++  DG K  S CTFEG
Sbjct: 25  GDEHEKDLRDGSKRISGCTFEG 46


>SB_20198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +2

Query: 203 TFKTTEMKFKPGEEFEEERADGVKVKSVCTFEGNILKQIQKAADGLEVTYIREFGPEELK 382
           T K+ ++++ P +  E++  D + V+ VC  +   +        G+E  Y+ EF P+E  
Sbjct: 124 TDKSAQIRYAPVKVIEQKENDQLLVQPVCYMDAIPV--------GVEDGYVHEFIPDEYL 175

Query: 383 AVMTAKDVTCT 415
              + +  T T
Sbjct: 176 TASSVRGSTLT 186


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 148  GHSISRLAGDQSHTECLHEIVEVLGCGH 65
            GH  +   GD    EC+  I   L CGH
Sbjct: 1849 GHQCAAKCGDDCTKECMVMIERTLPCGH 1876


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,545
Number of Sequences: 59808
Number of extensions: 303225
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)