Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J14
         (539 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54XY6 Cluster: Ankyrin repeat-containing protein; n=1;...    33   4.2  
UniRef50_A3LV72 Cluster: DNA-dependent RNA polymerase I subunit ...    32   9.7  

>UniRef50_Q54XY6 Cluster: Ankyrin repeat-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: Ankyrin
           repeat-containing protein - Dictyostelium discoideum AX4
          Length = 908

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 284 IASAEIVICLPAIYKTYNLLNFLKHWTFYNVTCNKKNH**CHYDKKKTRPNIFSIAQSES 105
           +++ + +IC   IY    +L FL ++   N+ CN  N+   + +      NI +I+ S  
Sbjct: 148 LSTLDRIICFSIIYSQDQILLFLLNFILSNINCNNNNNNNNNNNNNNNNNNISNISNSNR 207

Query: 104 L 102
           L
Sbjct: 208 L 208


>UniRef50_A3LV72 Cluster: DNA-dependent RNA polymerase I subunit
           A43; n=2; Pichia|Rep: DNA-dependent RNA polymerase I
           subunit A43 - Pichia stipitis (Yeast)
          Length = 307

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 208 QCFRKFNKLYVLYIAGRHITISAEAMMVQWLVPLDSAFID--AGSMPHYPTLKSA*DPVK 381
           QCF KF+    + +A  H+      +  Q L PL   ++    G +  Y  +K + D   
Sbjct: 39  QCFYKFSTSLYVSLAPAHLNSPINGLKAQHLDPLIMTYLPKAGGVVLSYSNIKLSEDNSS 98

Query: 382 EKSRGNHSTV 411
           E + GN  TV
Sbjct: 99  EDAEGNAITV 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,968,385
Number of Sequences: 1657284
Number of extensions: 10420926
Number of successful extensions: 23545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23527
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)