Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J14
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   1.7  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   1.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.9  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.2  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 426 MMPAWVATSSSLKKTGKYVNSCVLTASLDNRY 521
           M PA+    S L K  KY+    + A+ D RY
Sbjct: 2   MFPAFKVRVSGLDKKSKYILLMDIVAADDCRY 33


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 426 MMPAWVATSSSLKKTGKYVNSCVLTASLDNRY 521
           M PA+    S L K  KY+    + A+ D RY
Sbjct: 2   MFPAFKVRVSGLDKKSKYILLMDIVAADDCRY 33


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 214 NIGHFTM*HVIKKITDDVTMIKKKPVL 134
           N+G   + H +    DDV ++K +P L
Sbjct: 8   NLGSMDIKHEMIYREDDVLLVKSEPQL 34


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 287 IIASAEIVICLPAIYKTYNLLN 222
           + A+   V+C   I+ TY L N
Sbjct: 15  VSAATNKVVCYHGIWSTYRLNN 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,056
Number of Sequences: 336
Number of extensions: 2681
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)