Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J14
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.11 
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    25   5.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.2  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 435 RASLENAYHRAMVPSRFFLHRISGR 361
           R  +EN+Y R + P  FF H ++GR
Sbjct: 803 RGFIENSYLRGLTPQEFFFHAMAGR 827


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 238 VLYIAGRHITISAEAMM 288
           V+Y+ G H+T+S E+M+
Sbjct: 156 VIYVGGFHLTVSPESML 172


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 32   LFRSILIASPPPPKSAKLTKLTCVSSQIGLLKIY*DGFFFYHSDIISDFFYY 187
            LFR I + SP   K  ++  L+    +  LL    D FF   S  +S+  +Y
Sbjct: 2005 LFRPIWMGSPDNKKICEILFLSFGFKESSLLSQVLDSFFLCCSGSLSNCLHY 2056


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 254 PAIYKTYNLLNFLKHWTFYNV 192
           PA+ + Y  + FL++WT  N+
Sbjct: 296 PAVQEKYWNVGFLRYWTLNNI 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,588
Number of Sequences: 5004
Number of extensions: 43626
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)