Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J14
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 1.0
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.0
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 29 3.1
02_05_0351 + 28230695-28230882,28230998-28231143,28231264-282313... 28 4.1
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968... 28 5.5
10_06_0146 + 11230357-11230364,11230847-11230893,11231535-112316... 27 7.2
02_02_0371 - 9513742-9514293,9514784-9514923,9515217-9515556,951... 27 7.2
08_02_1463 - 27313436-27314146 27 9.6
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 27 9.6
01_01_0104 + 780442-781273,782514-783424 27 9.6
>08_01_0364 -
3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 435 RASLENAYHRAMVPSRFFLHRISGR 361
R +EN+Y R + P FF H + GR
Sbjct: 815 RGFVENSYLRGLTPQEFFFHAMGGR 839
>05_01_0367 -
2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 435 RASLENAYHRAMVPSRFFLHRISGR 361
R +EN+Y R + P FF H + GR
Sbjct: 853 RGFVENSYLRGLTPQEFFFHAMGGR 877
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 382 PSPDLRPILESDSAASNPRR*TRNPAALTTAPSSLQLRL*YVYPLYIKHITY 227
P P + + A S+P + T AA TT+P+ + + Y +Y+KH+ Y
Sbjct: 279 PKPTAKVTDNVEKAVSSPVKPTN--AADTTSPNDKNVLVEQGYSVYVKHLPY 328
>02_05_0351 +
28230695-28230882,28230998-28231143,28231264-28231343,
28231805-28231907,28233027-28233050,28233246-28233418,
28233742-28233888,28234011-28234082,28234387-28234505,
28234626-28234739,28234994-28235039,28235169-28235252
Length = 431
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 11 TVLYRCDLFRSILIASPPPPKSAKLTKLTCVSSQIGLLKIY*D-GFFFYHSDIISDFFYY 187
++L R ++++ PPPP + T +T + G L Y + G+ + ++ FYY
Sbjct: 19 SLLLRLVACLALVLLLPPPPPAQAATVVTHLPGFDGPLPFYLETGYVGVEEETGTELFYY 78
Query: 188 MLHCKMSNVSENLISYM 238
+ + S S+ ++ ++
Sbjct: 79 FVESERSPRSDVVLLWL 95
>04_04_0998 -
29996117-29996242,29996345-29996486,29996613-29996812,
29997112-29997497,29997769-29998318,29998949-29999296
Length = 583
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 397 SLAIFPSPDLRPILESDSAASNPRR*TRNPAA 302
S A+ P PDL P+ S SAAS+ +R+ A
Sbjct: 13 SPALEPHPDLSPVFSSPSAASSSSSSSRDEGA 44
>10_06_0146 +
11230357-11230364,11230847-11230893,11231535-11231642,
11231789-11231828,11231995-11232757
Length = 321
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 517 RLSSDAVRTQLFTYLPVFFKLEDVATQAGIIRKCLPPCYGSLAIFPS 377
R S+ + Y P+ F L T G ++ + YG + FPS
Sbjct: 15 RSPSEFFANRFIVYSPLSFNLSSSKTSGGNLKILMWTIYGGMVAFPS 61
>02_02_0371 -
9513742-9514293,9514784-9514923,9515217-9515556,
9515659-9515721,9515812-9515910,9516016-9516126,
9517114-9517257
Length = 482
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 146 FFYHSDIISDFFYYMLHCKMSNVSENLISYMF 241
FFY D + +LH KM+N +E+ + Y F
Sbjct: 372 FFYFDDFTTTELAEILHLKMNNPTESSLLYGF 403
>08_02_1463 - 27313436-27314146
Length = 236
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 5 VKTVLYRCDLFRSILIASPPPPKSAK 82
++T LY L + +LI PPPP +A+
Sbjct: 194 MRTDLYFASLAQGLLIEPPPPPTTAE 219
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 29 DLFRSILIASPPPPKSAKLTKLTCVSSQIGLLKI 130
++ +S LI+S P P+++ + C IG LK+
Sbjct: 775 EISKSELISSSPSPRNSSANEQGCEGDNIGKLKV 808
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 223 FNKLYVLYIAGRHITISAEAMMVQWLVPLDSAFIDAGSMPHYPTLKSA*DPV-KEKS 390
F + L G++ + A + +L+PLD + GS+P P S P KEK+
Sbjct: 170 FGPISCLSGTGQYFSYLVHAQLYMYLLPLDCRIVSRGSIP-IPGSDSCSGPTFKEKA 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,320
Number of Sequences: 37544
Number of extensions: 304346
Number of successful extensions: 883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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