Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J14
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39618| Best HMM Match : PAM2 (HMM E-Value=0.065)                    30   1.4  
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    30   1.4  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   29   2.4  
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              28   4.2  

>SB_39618| Best HMM Match : PAM2 (HMM E-Value=0.065)
          Length = 144

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 29  DLFRSILIASPPPPKSAKLTKLTCVSSQIG--LLKIY*DGFFFYHSDIISD 175
           D+ + +++   PPPK    T      S++   L K+  DG FFY  D+  D
Sbjct: 13  DIHKIMIVTQTPPPKKHDRTGDFVPRSKMTHELSKVINDGLFFYEEDLWDD 63


>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 29  DLFRSILIASPPPPKSAKLTKLTCVSSQIG--LLKIY*DGFFFYHSDIISD 175
           D+ + +++   PPPK    T      S++   L K+  DG FFY  D+  D
Sbjct: 303 DIHKIMIVTQTPPPKKHDRTGDFVPRSKMTHELSKVINDGLFFYEEDLWDD 353


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 246  YSG*TYHNLS*SDDGAVVSAAGFRVHRRGFDAALSDSKIGLRSGE 380
            Y G + + L+ SD  +VVS   FRV R G   +L+  K+ L   E
Sbjct: 1833 YPGHSGYRLTPSDGTSVVSLQKFRVKRDGIVKSLTPGKVKLNVNE 1877


>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 435  RASLENAYHRAMVPSRFFLHRISGR 361
            R  +EN+Y   + P+ FF H + GR
Sbjct: 1145 RGFVENSYLAGLTPTEFFFHAMGGR 1169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,363,841
Number of Sequences: 59808
Number of extensions: 329581
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)