Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J14
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   3.7  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   3.7  
U28992-4|AAA68392.1|  100|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical
           protein T28F3.8 protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 301 VPLDSAFIDAGSMPHYP 351
           +P+D  F D GS PHYP
Sbjct: 418 IPIDYIFADEGSFPHYP 434


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 537 HTKPRGTGCQVMLSEHNYLRICRFFSNLRM 448
           H K R   C++  +E ++ R+CRF   L+M
Sbjct: 55  HCKTRKNDCRIDSTERHFCRLCRFQKCLQM 84


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 426 LENAYHRAMVPSRFFLHRISGR 361
           +EN+Y   + PS FF H + GR
Sbjct: 813 VENSYLAGLTPSEFFFHAMGGR 834


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 426 LENAYHRAMVPSRFFLHRISGR 361
           +EN+Y   + PS FF H + GR
Sbjct: 813 VENSYLAGLTPSEFFFHAMGGR 834


>U28992-4|AAA68392.1|  100|Caenorhabditis elegans Hypothetical
           protein T05C1.5 protein.
          Length = 100

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -2

Query: 487 LFTYLPVFFKLEDVATQAGIIRKCLPPCYGSLAIFPSPDLRPILESDSAASNPRR*TRN 311
           +  +LP FF L  V   A  ++ C    YG   +  SPDL     S  A   P   TR+
Sbjct: 13  MLQFLP-FFMLSSVIISAQELKTCRTVSYGVDQVITSPDLCEDKFSGCAVRKPYCKTRS 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,231,726
Number of Sequences: 27780
Number of extensions: 254142
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)