Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J14
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.0  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 173 DFFYYMLHCKMSN 211
           DF + +LHC M N
Sbjct: 302 DFLFQVLHCNMEN 314


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 281 ASAEIVICLPAIYKTY 234
           ++ E+V+ +P+IY TY
Sbjct: 34  SNVEVVVGVPSIYLTY 49


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 331 GSMPHYPTLKSA*DPVKEK 387
           GSMP  PT+ S   P++ +
Sbjct: 437 GSMPTMPTMPSMAGPIRRR 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,084
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)