Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J14
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    30   0.86 
At3g45400.1 68416.m04901 exostosin family protein contains Pfam ...    27   6.1  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
           subunit (RPB205) (RPII) (RPB1) nearly identical to
           P|P18616 DNA-directed RNA polymerase II largest subunit
           (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 435 RASLENAYHRAMVPSRFFLHRISGR 361
           R  +EN+Y R + P  FF H + GR
Sbjct: 817 RGFVENSYLRGLTPQEFFFHAMGGR 841


>At3g45400.1 68416.m04901 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 475

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 190 HVIKKITDDVTMIKKKPVLIYFQ 122
           HVIK   +D +    +P+L+YFQ
Sbjct: 261 HVIKAYENDTSGFDSRPILLYFQ 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,423,807
Number of Sequences: 28952
Number of extensions: 236456
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)