Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J12
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   5.9  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   7.8  

>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 5   WTGIYERNA--RIESYKMILSIAVLTLLIIQASPIPQEDASALLKYDELYYNIVI 163
           + GI  R+A  R  ++  + S+ + T++ ++     +ED     K+   YY+I +
Sbjct: 66  YPGIIYRSACPRASNFNFLESLHIRTIISLRQEEYSEEDLHYFTKHHINYYHIAM 120


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 365 KSSENVLGSNHGLCRFHPCLTKLIPRN 285
           KSS+ +LG       F PCL KLI  N
Sbjct: 265 KSSKKLLGLYELNTLFPPCLNKLIQLN 291


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 149  YNIVIGRYVSAARITMELKNEGRGEVIRLVVN 244
            Y I+I R ++  +I   +KN+  G+V  L+ +
Sbjct: 1556 YYIIIKRPIALGKIKRNIKNDRYGDVGELIAD 1587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,134
Number of Sequences: 5004
Number of extensions: 26427
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)