Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J12
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0180 + 32175658-32178145,32178765-32178808                       28   3.2  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    26   9.9  
03_01_0215 + 1696250-1696573,1697653-1697793,1698267-1698539,169...    26   9.9  

>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 170 YVSAARITMELKNEGRGEVIRLVVNXA 250
           Y+S   I +EL+ EG G++I ++ N A
Sbjct: 816 YMSLKSILLELREEGHGDLIAMLSNTA 842


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 404 ISEIDKLYFVHPIKSSENVLGSNHGLCRFH 315
           I E      V PIK +E V G+  G CR H
Sbjct: 445 IREAYDFIMVMPIKPNERVWGALLGACRIH 474


>03_01_0215 +
           1696250-1696573,1697653-1697793,1698267-1698539,
           1698755-1698814,1698890-1699033
          Length = 313

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 71  LTLLIIQASPIPQEDASALLKYDELYYNIVIGRYVSAARI 190
           ++ LI +A    +   + L  Y+++ +N+V+GRY S   +
Sbjct: 222 MSKLITRADDTEEVVRNRLQIYNDMVFNVVLGRYKSCTML 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,525,798
Number of Sequences: 37544
Number of extensions: 164830
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)