Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J12
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55854-2|AAA98011.2| 1427|Caenorhabditis elegans Phospholipase d...    28   2.2  
AB028889-1|BAA97571.1| 1427|Caenorhabditis elegans phospholipase...    28   2.2  

>U55854-2|AAA98011.2| 1427|Caenorhabditis elegans Phospholipase d
           protein 1 protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 400 LRLINFTLFT-QLNPAKMYWEVITDYADFTLV 308
           +  IN  L+T +L   +  W VI +Y DFTL+
Sbjct: 171 IHFINTLLYTIELEHGQFRWSVIRNYKDFTLL 202


>AB028889-1|BAA97571.1| 1427|Caenorhabditis elegans phospholipase D
           protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 400 LRLINFTLFT-QLNPAKMYWEVITDYADFTLV 308
           +  IN  L+T +L   +  W VI +Y DFTL+
Sbjct: 171 IHFINTLLYTIELEHGQFRWSVIRNYKDFTLL 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,510
Number of Sequences: 27780
Number of extensions: 148339
Number of successful extensions: 298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)