Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J10
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.49 
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    28   0.85 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   2.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.6  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   2.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   4.5  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 160 LPTIALTSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTT 285
           L T    S    RT+ TS       S HA   ++  S+SSTT
Sbjct: 790 LATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTT 831


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 130 QEETTAQALELPTIALTSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTTPP 291
           Q E  A+ LEL T +  SDG   T    D K  ++S      +N+ S+     P
Sbjct: 19  QHENVAEDLELGTASSQSDGIHETNSEYDEKKREESPEVIDISNLISSDHPAHP 72


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 178 TSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSST 282
           +S G+E T P++ AKS + S HA   +   S  S+
Sbjct: 489 SSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSS 523


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 475 CADTYNYDLLNRICYIIKQIMKYN 404
           C D  N D L+R+C IIK  ++ N
Sbjct: 218 CEDLENTDDLHRLCSIIKSFVQLN 241


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 163 PTIALTSDGKERTLP--TSDAKSLKDSLHAGHTTNVCSTSSTTPPAQ*LQHGESSLPSVP 336
           PT+  TS     T P   S + +   S     T+  C+TS++ PP      G S+ P  P
Sbjct: 303 PTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPT-----GNSTTPVTP 357

Query: 337 T 339
           T
Sbjct: 358 T 358



 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 205 PTSDAKSLKDSLHAGHTTNVCSTSSTTPPAQ*LQHGESSLPSVPT 339
           PTS + +  +S     T+  C+TS++ PP      G S+ P  PT
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPT-----GNSTTPVTPT 304


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 130 QEETTAQALELPTI--ALTSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTT 285
           QE  +A  ++ P +   LTS  K  T   SD+ S + S     ++++ STS ++
Sbjct: 236 QEFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSSDLSSTSDSS 289


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 292 PAESSTTSSTRWSCVPRGGSP 230
           P  SSTTSS   + V  GGSP
Sbjct: 94  PTVSSTTSSANPAIVSNGGSP 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,509
Number of Sequences: 5004
Number of extensions: 24414
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)