Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J10
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0761 - 6394141-6394241,6395419-6395732,6398022-6398173 31 0.37
10_08_0898 + 21424379-21424792,21424974-21425723 30 0.85
01_06_0693 - 31280108-31281271 29 2.0
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 29 2.6
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 28 3.4
04_04_0786 - 28052981-28053040,28053123-28053222,28053447-280535... 28 3.4
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 28 4.5
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 28 4.5
10_01_0088 + 1087807-1088282,1088752-1088974 28 4.5
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 28 4.5
02_01_0039 - 271926-273503 28 4.5
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 28 4.5
12_02_0007 + 12233650-12233913 27 6.0
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 27 6.0
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 27 6.0
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 27 6.0
02_03_0259 + 16934848-16935599,16935659-16935911 27 6.0
01_06_1037 + 33990358-33991263 27 6.0
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 27 7.9
10_01_0320 + 3506183-3507109 27 7.9
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 27 7.9
>11_01_0761 - 6394141-6394241,6395419-6395732,6398022-6398173
Length = 188
Score = 31.5 bits (68), Expect = 0.37
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 187 GKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTTPPAQ*LQHGESSLP 327
G RTL S+ AGHT ++ STSS + + LQ G SLP
Sbjct: 122 GNHRTLHQLCFASIWGEAAAGHTYHIYSTSSVSQCKRGLQGGSRSLP 168
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 30.3 bits (65), Expect = 0.85
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 292 PAESSTTSSTRWSCVPRGGSPSGTWRPTWV-GSSPCRRS*GRWSAALGL 149
P++SS +SS S P PSGT RP G S ++S G A +G+
Sbjct: 223 PSQSSPSSSCSSSDFPSSNKPSGTARPNGSGGGSRGKKSPGPAGAEVGM 271
>01_06_0693 - 31280108-31281271
Length = 387
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = -3
Query: 293 AGGVVDDVEHTLVVCPAWRESFRDLASDVGRVLSLPSLVRAMVGSSRAWAVVSS 132
AG VVDDV VV WR RD A V R + R +VG + A++ S
Sbjct: 318 AGRVVDDVTRRAVVEELWRSGRRDDAERVVREME----ERGIVGGAERRALLRS 367
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 133 EETTAQALELPTIALTSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTT 285
++TT A++LPT L++ K ++ DA+S + A + S+S T
Sbjct: 755 QQTTTSAVKLPTAILSTYAKAKSRAKKDAESKANQEKATEDASGSSSSKAT 805
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 174 PHERRQGEDPTHVGRQVPEGLPP 242
P + G DP VGR+ PEG P
Sbjct: 121 PWQESAGSDPNGVGRRAPEGRAP 143
>04_04_0786 -
28052981-28053040,28053123-28053222,28053447-28053574,
28053654-28053821,28053901-28054013,28054135-28054287,
28054385-28054528,28054794-28055529
Length = 533
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = -1
Query: 322 GNSLRVVITVPAESSTT---SSTRWSCVPRGGSPSGTW-RPTWV--GSSPCRRS*GRWSA 161
GN +P S T +ST RGG GTW RP++ G+ P R G SA
Sbjct: 2 GNCFTKTYEIPITSGTMRRPASTAERSKARGGDEPGTWRRPSFPRHGAPPHRPPTGSSSA 61
Query: 160 ALGLGR 143
A L R
Sbjct: 62 AGALSR 67
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 304 VITVPAESSTTSSTRWSCVPRGGSPSGTWRPTWVGSSPCRRS 179
V+T P T W P + G WRP VG+ RRS
Sbjct: 330 VLTWPGVEPVTKKPVWR-PPEVAADQGMWRPPEVGADQGRRS 370
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 304 VITVPAESSTTSSTRWSCVPRGGSPSGTWRPTWVGSSPCRRS 179
V+T P T W P + G WRP VG+ RRS
Sbjct: 333 VLTWPGVEPVTKKPVW-LPPEVAADQGMWRPPEVGADQGRRS 373
>10_01_0088 + 1087807-1088282,1088752-1088974
Length = 232
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 244 RGGSPSGTWRPTWVGSSPCRRS*G 173
RG S G WR W G CRR G
Sbjct: 104 RGCSGGGRWRGCWRGRRGCRRGSG 127
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 114 HDGFATGRDNRPSPRAAD-HRPHERRQGEDPTHVGRQVPEGLPP 242
H GR+ SP AD HR H++ Q P +Q+P P
Sbjct: 282 HHPIHGGRERGSSPAEADHHRHHQQEQPPPPPQQQQQLPPSWLP 325
>02_01_0039 - 271926-273503
Length = 525
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 225 PEGLPPRGTHDQRVLDVVDDSAGTVITTRR 314
P GLPP +HD R+ ++ D+A + R
Sbjct: 487 PSGLPPERSHDHRI-PLISDTAAVAVRPYR 515
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 158 SRAWAVVSSCCEAIMLAKEDAEQERERAAH 69
++ W + SC + ++ A+E ++E+ER AH
Sbjct: 217 AQTWILEDSCPDYMLKAEECLKREKERVAH 246
>12_02_0007 + 12233650-12233913
Length = 87
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 253 CVPRGGSPSGTWRPTWVGSSPCR 185
CV RGG G W G +PCR
Sbjct: 27 CVSRGGERGGGRGWAWSGRTPCR 49
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 292 PAESSTTSSTRWSCVPRGGSPSGTWRP 212
P E S ++S+RW+ VPRGG+ + P
Sbjct: 666 PGEPSLSASSRWA-VPRGGAEAAGLSP 691
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 270 DVVDDSAGTVITTRREFPP 326
D DDSA V+ TR+ FPP
Sbjct: 91 DADDDSAAVVVVTRQFFPP 109
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 120 GFATGRDNRP---SPRAADHRPHERRQG 194
GFA R RP SPR++ RPH RRQG
Sbjct: 288 GFAKSRIQRPPTPSPRSSFSRPH-RRQG 314
>02_03_0259 + 16934848-16935599,16935659-16935911
Length = 334
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 114 HDGFATGRDNRPSPRAADHRPHER 185
HD FA + P+PRAA RP R
Sbjct: 220 HDEFAAPMRSSPTPRAASSRPAPR 243
>01_06_1037 + 33990358-33991263
Length = 301
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 317 LSPCCNHCAGGVVDDVEHTLVVCPAWRESFRDLASDVGRVLSLPSLVRAMVGSSRAWAVV 138
+S C H G DD+ V + S R A VGR +L VR +R W++V
Sbjct: 172 VSDPCEHAVAGAGDDLGAYRGVFRGFMRS-RTRACLVGRQAALDPRVRCPYCGARVWSMV 230
Query: 137 SS 132
++
Sbjct: 231 AA 232
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 172 ALTSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTTPP 291
A D E + TSD + + + G +TSS++PP
Sbjct: 218 AADEDEVEHVVDTSDEEKEEGEIEEGEAVQTTTTSSSSPP 257
>10_01_0320 + 3506183-3507109
Length = 308
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +3
Query: 141 NRPSPRAADHRPHERRQGEDPTHVGRQVPEGLPPRGTHDQRVLDVVDDSA-GTVITTR 311
+R A DH P R G + P D LDVV + A G VI R
Sbjct: 13 SRKRAAAPDHEPTASRSSTPAAAAGAKRPRRYALASVDDYEQLDVVSEGASGVVIMAR 70
>09_06_0309 -
22206812-22206884,22207008-22207103,22207531-22207619,
22207738-22207820,22207932-22208048,22208132-22208319,
22208430-22208500,22208570-22208782,22210022-22210081,
22210186-22210476,22210590-22211894
Length = 861
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 278 DDVEHTLVVCPAWRESFRDLASDVGRVL 195
++ EH +VV P W + DL +D+ R L
Sbjct: 27 EEEEHVVVVVPPWADLPFDLLADISRRL 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,141
Number of Sequences: 37544
Number of extensions: 209584
Number of successful extensions: 874
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -