Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J10
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated...    32   0.25 
AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated...    32   0.25 
AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated...    32   0.25 
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        31   0.33 
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    31   0.33 
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    31   0.33 
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z49937-5|CAC42288.1|  296|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z49937-4|CAC42287.1|  269|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U31537-2|AAA82992.1|  261|Caenorhabditis elegans male abnormal-1...    27   5.4  
U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable abnorm...    27   5.4  
U29184-1|AAC47542.1|  296|Caenorhabditis elegans MAB-18 protein.       27   5.4  
U29145-1|AAC47541.1|  284|Caenorhabditis elegans MAB-18 protein.       27   5.4  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    27   9.4  

>AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated
           protein 23, isoform b protein.
          Length = 399

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 174 PHERRQGEDPTHVGRQVPEGLPPRGTHDQRVLDVVDDSAGTVIT 305
           P +   G DP+ +   + EG P RG   QR   VVD +A T++T
Sbjct: 191 PEQETDG-DPSPLTSPITEGKPKRGKKLQRNQSVVDFNAKTIVT 233


>AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated
           protein 23, isoform c protein.
          Length = 457

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 174 PHERRQGEDPTHVGRQVPEGLPPRGTHDQRVLDVVDDSAGTVIT 305
           P +   G DP+ +   + EG P RG   QR   VVD +A T++T
Sbjct: 249 PEQETDG-DPSPLTSPITEGKPKRGKKLQRNQSVVDFNAKTIVT 291


>AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated
           protein 23, isoform a protein.
          Length = 458

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 174 PHERRQGEDPTHVGRQVPEGLPPRGTHDQRVLDVVDDSAGTVIT 305
           P +   G DP+ +   + EG P RG   QR   VVD +A T++T
Sbjct: 250 PEQETDG-DPSPLTSPITEGKPKRGKKLQRNQSVVDFNAKTIVT 292


>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 283 SSTTSSTRWSCVPRGGSPSGTWRPTWVGSSPCRRS*GRWSAALGLGRLSL 134
           +S+TSS+  SC P GG PSG+ + +  G S  ++   ++  A G    S+
Sbjct: 3   ASSTSSSSTSC-PEGGEPSGSCKSSDEGESTLKKRMQQYGIASGYANSSI 51


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 283 SSTTSSTRWSCVPRGGSPSGTWRPTWVGSSPCRRS*GRWSAALGLGRLSL 134
           +S+TSS+  SC P GG PSG+ + +  G S  ++   ++  A G    S+
Sbjct: 3   ASSTSSSSTSC-PEGGEPSGSCKSSDEGESTLKKRMQQYGIASGYANSSI 51


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 283 SSTTSSTRWSCVPRGGSPSGTWRPTWVGSSPCRRS*GRWSAALGLGRLSL 134
           +S+TSS+  SC P GG PSG+ + +  G S  ++   ++  A G    S+
Sbjct: 3   ASSTSSSSTSC-PEGGEPSGSCKSSDEGESTLKKRMQQYGIASGYANSSI 51


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 256 SCVPRGGSPSGTWRPTWVGSSPCR 185
           SC P+G SPSG +   W   + CR
Sbjct: 172 SCAPKGYSPSGEFDSDWYCIACCR 195


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 178 TSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTTPPA 294
           T DG++ T  T  AK+L+ +  +   T +C+  S   P+
Sbjct: 321 TDDGQQPTTSTGGAKALRRAYGSKSGTTICAIGSPNVPS 359


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 178 TSDGKERTLPTSDAKSLKDSLHAGHTTNVCSTSSTTPPA 294
           T DG++ T  T  AK+L+ +  +   T +C+  S   P+
Sbjct: 321 TDDGQQPTTSTGGAKALRRAYGSKSGTTICAIGSPNVPS 359


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 250 VPRGGSPSGTWRPTWVGSSPCRRS*GRWSA 161
           V R  S S TW    V + P  R  G WSA
Sbjct: 292 VNRNSSVSHTWHSVCVSTEPVERKLGGWSA 321


>Z49937-5|CAC42288.1|  296|Caenorhabditis elegans Hypothetical
           protein F14F3.1c protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 GFATGRDNRPSPRAADHRPHERRQGEDP 203
           G A G    P P+  D +PH   QG  P
Sbjct: 198 GIANGFSMAPYPQVTDFQPHHMFQGRSP 225


>Z49937-4|CAC42287.1|  269|Caenorhabditis elegans Hypothetical
           protein F14F3.1b protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 GFATGRDNRPSPRAADHRPHERRQGEDP 203
           G A G    P P+  D +PH   QG  P
Sbjct: 171 GIANGFSMAPYPQVTDFQPHHMFQGRSP 198


>Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical
           protein F14F3.1a protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 GFATGRDNRPSPRAADHRPHERRQGEDP 203
           G A G    P P+  D +PH   QG  P
Sbjct: 357 GIANGFSMAPYPQVTDFQPHHMFQGRSP 384


>U31537-2|AAA82992.1|  261|Caenorhabditis elegans male abnormal-18
           protein.
          Length = 261

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 GFATGRDNRPSPRAADHRPHERRQGEDP 203
           G A G    P P+  D +PH   QG  P
Sbjct: 163 GIANGFSMAPYPQVTDFQPHHMFQGRSP 190


>U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable
           abnormal-3 protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 GFATGRDNRPSPRAADHRPHERRQGEDP 203
           G A G    P P+  D +PH   QG  P
Sbjct: 357 GIANGFSMAPYPQVTDFQPHHMFQGRSP 384


>U29184-1|AAC47542.1|  296|Caenorhabditis elegans MAB-18 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 GFATGRDNRPSPRAADHRPHERRQGEDP 203
           G A G    P P+  D +PH   QG  P
Sbjct: 198 GIANGFSMAPYPQVTDFQPHHMFQGRSP 225


>U29145-1|AAC47541.1|  284|Caenorhabditis elegans MAB-18 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 GFATGRDNRPSPRAADHRPHERRQGEDP 203
           G A G    P P+  D +PH   QG  P
Sbjct: 186 GIANGFSMAPYPQVTDFQPHHMFQGRSP 213


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 108 REHDGFATGRDNRPSPRAADHRPHERRQGEDPTHVGRQVPEGLPPRGTHDQR 263
           R     ++GR    SPR  D RP   R G   + + R    G PPRG    R
Sbjct: 35  RSSSSSSSGRSRSRSPRRRDTRP-PARGGRSRSPIRR----GSPPRGARADR 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,338,131
Number of Sequences: 27780
Number of extensions: 152134
Number of successful extensions: 666
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)