Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J10
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04040.1 68416.m00426 expressed protein                             34   0.058
At5g18250.1 68418.m02145 expressed protein similar to unknown pr...    29   1.6  
At5g25850.1 68418.m03067 F-box family protein contains F-box dom...    27   5.0  
At3g50910.1 68416.m05574 expressed protein                             27   5.0  
At5g63720.1 68418.m07998 hypothetical protein                          27   6.6  
At5g58520.1 68418.m07328 protein kinase family protein contains ...    27   6.6  
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi...    27   8.8  
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains...    27   8.8  
At1g15280.2 68414.m01829 glycine-rich protein                          27   8.8  
At1g15280.1 68414.m01828 glycine-rich protein                          27   8.8  

>At3g04040.1 68416.m00426 expressed protein
          Length = 134

 Score = 33.9 bits (74), Expect = 0.058
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 326 GRELSPCCNHCAGGVVDDVE-HTLVVCPAWRESFRDLASDVGRVLS 192
           G+E+   C+HCAG +  ++E +   V P  R+SF  + S VG   S
Sbjct: 5   GKEIGSRCHHCAGPLTKNLETNEWTVAPFIRDSFSMIGSAVGGTAS 50


>At5g18250.1 68418.m02145 expressed protein similar to unknown
           protein (dbj|BAA90342.1)
          Length = 133

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 326 GRELSPCCNHCAGGVVDDVEHT-LVVCPAWRESFRDLASDVGRVLS 192
           G ++   C+HCAG +  ++E +   V P  R+SF  + S VG   S
Sbjct: 5   GHDIEIRCHHCAGPLTRNLETSKWTVDPFIRDSFSMIGSAVGGTAS 50


>At5g25850.1 68418.m03067 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 370 IDMRVYFLVNYSYISLFALLYNKYGSINHNCMCLHKVR 483
           +++  YFL N S +    L  NKYGS   N   LHK R
Sbjct: 432 LNLAKYFLENSSILQKLTLHPNKYGSTYAN--MLHKFR 467


>At3g50910.1 68416.m05574 expressed protein
          Length = 447

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 202 LPTSDAKSLKDSLHAGHTTNVCSTSSTT------PPAQ*LQHGESSLPSVPT 339
           +PT  A +L   L  G +T+V S  STT      PP   L+ G+  LP+  T
Sbjct: 1   MPTFSAIALDRMLEPGASTSVESVPSTTNLFYSKPPISKLEKGKGKLPNERT 52


>At5g63720.1 68418.m07998 hypothetical protein 
          Length = 492

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 229 KDSLHAGHTTNVCSTSSTTPPAQ*LQHGESSLPSV 333
           K  LH    +NV  +S TTPPA   Q   S +  V
Sbjct: 71  KTVLHGAKPSNVADSSETTPPAMLSQINGSHITRV 105


>At5g58520.1 68418.m07328 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 604

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -1

Query: 319 NSLRVVITVPAESSTTSSTRWSCVPRGGSPSGTW 218
           +++++ + +P+ S   S   W  +  GG+  G W
Sbjct: 308 STIQIQVPLPSSSFAVSVDEWQTIQSGGNEIGKW 341


>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
           protein similar to RNA binding protein PufA GB:AAD39751
           [Dictyostelium discoideum] and similar to Pumilio
           protein GB:A46221 [Drosophila sp.]
          Length = 1003

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = +3

Query: 114 HDGFATGRDNRPSPRAAD--HRPHERRQGEDPTHVGRQVPEGLPPRGT 251
           HD   +   N P+         P  R +  D   VGR    GLPP GT
Sbjct: 277 HDSLHSTAKNSPNTMLGSTMSSPVPRNRTPDSHLVGRSTASGLPPIGT 324


>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 639

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 239 RESFRDLASDVGRVLSLPSLVRAMVGSSRAWAVVSSCCEAIMLAKEDAEQERER 78
           RE  + + S V R+L  PSL+R        W+   S   + +  KE A +  +R
Sbjct: 313 REGAKVIWSYVDRILGQPSLIRESSRGKYPWSGSLSRVMSTLRGKESASKNGKR 366


>At1g15280.2 68414.m01829 glycine-rich protein
          Length = 585

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 196 RTLPTSDAKSLKDSLHAGHTTNVCSTSSTTPP 291
           R  PT+ AK+     HA     V S SS +PP
Sbjct: 255 RRSPTAPAKTENQGAHAKKNVAVSSLSSASPP 286


>At1g15280.1 68414.m01828 glycine-rich protein
          Length = 584

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 196 RTLPTSDAKSLKDSLHAGHTTNVCSTSSTTPP 291
           R  PT+ AK+     HA     V S SS +PP
Sbjct: 254 RRSPTAPAKTENQGAHAKKNVAVSSLSSASPP 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,894,256
Number of Sequences: 28952
Number of extensions: 142876
Number of successful extensions: 485
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)