Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J09
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   3e-11
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)                    32   0.20 
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.46 
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.80 
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.80 
SB_23918| Best HMM Match : rve (HMM E-Value=0.013)                     28   2.4  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    27   4.3  
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)                    27   5.6  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 28/49 (57%), Positives = 43/49 (87%)
 Frame = +1

Query: 4   SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
           +P+A D++ IL SVGIE+D E+L KVISEL+GK+V+E+I+AG+ KL+++
Sbjct: 666 NPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKLATV 714


>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
          Length = 694

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 4   SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 117
           SP+ AD+E IL   G E   EK+K+ +  L  K   +L
Sbjct: 540 SPSKADMEAILHDYGAELSEEKMKECMKALKTKKFSKL 577


>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 4   SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 117
           +P+ AD++ IL   G+E   EK+K+ +  L  K   +L
Sbjct: 544 TPSKADMKAILHDYGVELSEEKMKEYMKALKTKKFSKL 581


>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 378 YSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTEAHVV 265
           +SP+ Y Y +  N T    + P  +   L+K + AHVV
Sbjct: 310 HSPAAYEYFVQVNSTKIPLAYPGQYFKVLMKSSSAHVV 347


>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 4   SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 117
           +P+ AD++ IL   G E   EK+K+ +  L  K   +L
Sbjct: 285 TPSKADIKAILHDYGAELSEEKMKEYMKALKTKKFSKL 322


>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
          Length = 1785

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 4    SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 117
            +P+ AD+  IL   G E   EK+K+ +  L  K   +L
Sbjct: 909  TPSKADINVILHDYGAELSEEKMKENMKALKTKKFSKL 946


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 4   SPAAADVEKILSSVGIEADSEKLKKVI 84
           +P+ AD++ IL   G+E   EK+K+ +
Sbjct: 416 TPSKADMKAILHDYGVELSEEKMKEAL 442


>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
          Length = 1117

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 4   SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIE 123
           +P+ AD++ IL   G E    K+K+ +  L    VEE++E
Sbjct: 375 TPSKADIKAILHDYGAELSEGKMKEYMKAL---QVEEVLE 411


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 4    SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 117
            +P+ AD++ IL   G +   EK+K ++ E+   + EE+
Sbjct: 1369 TPSKADIKAILHDYGAQLSEEKMKYLV-EVKRMSAEEV 1405


>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 334 DQRRVHTH--SFYNETSQKDRSPCRR 263
           +Q++ HTH  SF  ET +  +SPC R
Sbjct: 20  EQKKFHTHNSSFLAETGRLCQSPCTR 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,421,349
Number of Sequences: 59808
Number of extensions: 98302
Number of successful extensions: 275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)