Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J09
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 52 1e-07
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 52 1e-07
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 52 1e-07
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 50 4e-07
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 48 2e-06
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 48 2e-06
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 45 2e-05
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 44 4e-05
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 28 2.6
At5g60270.1 68418.m07554 lectin protein kinase family protein co... 27 6.1
At5g16690.1 68418.m01954 origin recognition complex subunit 3-re... 27 6.1
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 27 6.1
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 27 6.1
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/50 (46%), Positives = 37/50 (74%)
Frame = +1
Query: 1 ASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
ASP +AD++ IL SVG E + +++ ++ E+ GK++ ELI AGR KL+S+
Sbjct: 16 ASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASV 65
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/50 (46%), Positives = 37/50 (74%)
Frame = +1
Query: 1 ASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
ASP +AD++ IL SVG E + +++ ++ E+ GK++ ELI AGR KL+S+
Sbjct: 16 ASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASV 65
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/50 (46%), Positives = 37/50 (74%)
Frame = +1
Query: 1 ASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
ASP +AD++ IL SVG E + +++ ++ E+ GK++ ELI AGR KL+S+
Sbjct: 16 ASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASV 65
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 50.4 bits (115), Expect = 4e-07
Identities = 22/50 (44%), Positives = 35/50 (70%)
Frame = +1
Query: 1 ASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
ASP D++ IL SVG E + +++ ++ E+ GK++ ELI AGR KL+S+
Sbjct: 16 ASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASV 65
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 48.4 bits (110), Expect = 2e-06
Identities = 19/50 (38%), Positives = 38/50 (76%)
Frame = +1
Query: 1 ASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
A+P+A +++ I+ +VG + D E ++ ++ E++GK++ ELI +GR KL+S+
Sbjct: 16 ANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASV 65
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 48.4 bits (110), Expect = 2e-06
Identities = 19/50 (38%), Positives = 38/50 (76%)
Frame = +1
Query: 1 ASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
A+P+A +++ I+ +VG + D E ++ ++ E++GK++ ELI +GR KL+S+
Sbjct: 16 ANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASV 65
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +1
Query: 4 SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
+P+ AD++KI+ SVG E D EK+ S + ++V ELI GR K++++
Sbjct: 17 NPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAAL 65
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 44.0 bits (99), Expect = 4e-05
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 4 SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 150
+P + D++KIL SVG E D K+ + S + +V ELI AGR K+S++
Sbjct: 17 NPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSAL 65
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 49 IEADSEKLKKVISELNGKNVEEL 117
IE D K+KKVI EL+ K E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025
>At5g60270.1 68418.m07554 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain,
PF00139: Legume lectins beta domain, and PF00138: Legume
lectins alpha domain
Length = 668
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 381 TYSPSCYSYNINWNKTTSAASTPTLFIMKLVK 286
T S Y Y + W+ + S AS P + I KL K
Sbjct: 241 TGSSMSYQYILGWSFSKSMASLPNIDISKLPK 272
>At5g16690.1 68418.m01954 origin recognition complex subunit
3-related / ORC3-related low similarity to SP|Q9UBD5
Origin recognition complex subunit 3 (Origin recognition
complex subunit Latheo) {Homo sapiens}
Length = 556
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 50 LRQTLRN*RRLSPSSMAKMLKS 115
+R+ LR R LSPS ++ MLKS
Sbjct: 420 IRRVLRKLRDLSPSQLSSMLKS 441
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +1
Query: 25 EKILSSVGIEADSEKLKKVISELNGKNVEELIE 123
E++L G+E +K++++E NG+ +E ++
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQ 357
>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 510
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 13 AADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 144
A+ VE +S+ D+E++ K++++ VE L+ KLS
Sbjct: 50 ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,889,633
Number of Sequences: 28952
Number of extensions: 72940
Number of successful extensions: 238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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