Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J07
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0240 - 16106963-16107538 30 1.4
10_08_0238 - 16093780-16094355 30 1.4
10_08_0234 - 16067579-16068157 29 2.4
10_08_0236 + 16078162-16078731 29 4.3
09_04_0702 - 19587943-19588168,19588423-19588525,19588809-195889... 29 4.3
10_08_0241 - 16111792-16112367 28 5.6
01_06_1794 - 39919363-39920025 28 7.5
10_08_0224 - 15993497-15994075 27 9.9
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 27 9.9
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125... 27 9.9
>10_08_0240 - 16106963-16107538
Length = 191
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGY 614
G Y + S +GY GY G SS +G++ GY
Sbjct: 88 GSGYGSGSGSSQTSQNGYYGYGGSSSAGGAGAGGGAGQAGGY 129
>10_08_0238 - 16093780-16094355
Length = 191
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGY 614
G Y S +GY GY G SS + +G++ GY
Sbjct: 88 GSGYGTGSGSSQTSQNGYYGYGGSSSASGAGVGGGAGQAGGY 129
>10_08_0234 - 16067579-16068157
Length = 192
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 501 SASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
S+S ++ Y+SGY GYS G +G + G +G
Sbjct: 95 SSSSQYATGYYSGYGGYSSAGGNGGGGGGGQAGGNWGSSG 134
>10_08_0236 + 16078162-16078731
Length = 189
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 501 SASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGY 614
+ S S SS+ +G GY G+S G G++ GY
Sbjct: 91 NGSGSSSSQTSNGEGGYGGESDAGGGGGGGGQGQAGGY 128
>09_04_0702 -
19587943-19588168,19588423-19588525,19588809-19588923,
19589061-19589086,19589178-19589398,19589493-19589608,
19589695-19589953,19590052-19590139,19590236-19590307,
19590401-19590476,19590746-19590809,19591139-19591259,
19592391-19592451,19592682-19592828
Length = 564
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 543 NGYSGQSSTNSGHTYDSSGRSQGYTGQVENT 635
NG +GQ + G+TYD RSQ +E T
Sbjct: 455 NGAAGQPDPSGGNTYDDDFRSQYLQDYIEAT 485
>10_08_0241 - 16111792-16112367
Length = 191
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +3
Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGY 614
G Y S +GY GY G SS +G++ GY
Sbjct: 88 GSGYGTGLGSSQTSQNGYYGYGGSSSAGGAGAGGGAGQAGGY 129
>01_06_1794 - 39919363-39920025
Length = 220
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
GR A+ + Y + GY G + N+G Y G GY G
Sbjct: 62 GRNDDAATAAVVGYAASGGGYGGSTKANAGANYGGGG-GYGYNG 104
>10_08_0224 - 15993497-15994075
Length = 192
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 519 SSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
++ Y +GY G G S++S SSG QGYTG
Sbjct: 78 ATSYGTGYGGGFGAGSSSS---QTSSGYYQGYTG 108
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 525 RYHSGYNGYSGQSSTNSGHTYDSSGRSQG 611
RY SG GY G + G Y +SG +G
Sbjct: 408 RYQSGRGGYRGDNFRGRGGGYANSGNYRG 436
>01_02_0110 +
11210174-11210292,11211635-11211752,11212426-11212522,
11212991-11213080,11213174-11213280,11213765-11213887,
11214055-11214208,11214582-11214642,11214748-11215103,
11216535-11218056,11218169-11218415
Length = 997
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 507 SDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDST 653
+D + HSG N G+ T+S +S +G + T ELD +
Sbjct: 504 TDEMPQQKHSGLNSSDGKMLTSSATLLESGEGMEGNDVEGSGTTELDGS 552
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,658,521
Number of Sequences: 37544
Number of extensions: 288092
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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