Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J07
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   2.5  
SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002)                   29   3.3  
SB_8206| Best HMM Match : Kunitz_legume (HMM E-Value=3)                29   4.4  
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)          28   7.6  
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 531 HSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
           H G  GY+G S   +G T   +G ++GYTG
Sbjct: 7   HGGTRGYTGGSRGYTGGTRGYTGGTRGYTG 36



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 498 YSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
           Y+     +  Y  G  GY+G +   +G T   +G ++GYTG
Sbjct: 3   YTGVHGGTRGYTGGSRGYTGGTRGYTGGTRGYTGGTRGYTG 43


>SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 495 TYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQE 641
           TY+ S SQ++RY   YN  S   +T   HTY+++ ++  Y      T +
Sbjct: 98  TYNTSTSQATRYVHTYNTTS--QATLYVHTYNTTSQATRYVHTYNTTSQ 144


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 528 YHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
           Y+SGYN  +G    N   TY+  G  +GY G
Sbjct: 508 YNSGYNHMNGPQGYNGPQTYE--GHQEGYEG 536


>SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002)
          Length = 698

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 633 CFQLVPY-ILEIDQNYHRCVLNLWKTVLNIRCIHCDILSFEN 511
           CF +VP+ I    + +HR +  L++ +  +  IH DIL + N
Sbjct: 304 CFSMVPFGISSPPEVFHRTIAQLFEGMDGVTSIHDDILVWGN 345


>SB_8206| Best HMM Match : Kunitz_legume (HMM E-Value=3)
          Length = 504

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 262 HPFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLH 158
           H  GV LN PY  RV   +P F   H    +   H
Sbjct: 142 HCPGVRLNKPYAVRVPMDIPVFTGTHADFLVVVFH 176


>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
          Length = 966

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = +3

Query: 465 YTIVCIK*GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQEL 644
           Y +VC +       SD  S     G +G  G    N G  Y + G    Y G  ++  + 
Sbjct: 367 YQMVCPEDDGDDYDSDDDSDGDDDGDDGNDGDDDDNDGDDYGNDGDGGNYDGNDDDDNDG 426

Query: 645 DST 653
           D +
Sbjct: 427 DDS 429


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 528 YHSGYN-GYSGQSSTNSGHTYDSSGRSQGYTGQVEN 632
           YHSG    Y G +   SG T + SG +  Y+G   N
Sbjct: 133 YHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRN 168


>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 510 DSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQ 623
           DS +    +G  GY+G  S +    YD  GR +GY G+
Sbjct: 13  DSLNDSRRTGDRGYNGYRSPDD--YYDRRGRDRGYDGR 48


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 528 YHSGYN-GYSGQSSTNSGHTYDSSGRSQGYTGQVEN 632
           YHSG    Y G +   SG T + SG +  Y+G   N
Sbjct: 133 YHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRN 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,741
Number of Sequences: 59808
Number of extensions: 347858
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)