Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J07
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U70847-2|AAB09105.2|  185|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    29   2.9  
Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   8.8  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 492  RTYSASDSQSSRYHSGYNGY---SGQSSTNSGHTYDSSGRSQGYTGQVEN 632
            ++Y    +Q +RY  G +GY   SG SS     + + SG +QG++G   N
Sbjct: 3214 QSYGQQQTQQNRYGMGSSGYTANSGGSSNILNQSMEESGLNQGFSGASSN 3263


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
           G +YS     SS    GY+G   +SS++ G +Y S G S   +G
Sbjct: 333 GSSYSGGGEASSSSGGGYSGGG-ESSSSGGSSYSSGGDSSSSSG 375


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
           G +YS     SS    GY+G   +SS++ G +Y S G S   +G
Sbjct: 333 GSSYSGGGEASSSSGGGYSGGG-ESSSSGGSSYSSGGDSSSSSG 375


>U70847-2|AAB09105.2|  185|Caenorhabditis elegans Hypothetical
           protein K09B3.1 protein.
          Length = 185

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +3

Query: 498 YSASDSQSSRYHSGYNGYSGQSS---TNSGHTYDSSGRSQGYTGQV 626
           +S S +Q   Y SGYNGY G  S   T  G  Y        Y  QV
Sbjct: 12  FSCSFAQYGLYGSGYNGYGGYGSGYGTGYGMGYGMGYPMNPYMNQV 57


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
            protein F53G12.3 protein.
          Length = 1503

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 301  RKTRTGSVFTAANSKGVYGSGNYDLSNLE 387
            R   TGS F   + KG YG GN +  N E
Sbjct: 1301 RSLNTGSPFPLIHMKGPYGDGNQEWMNYE 1329


>Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical
           protein C01G10.15 protein.
          Length = 100

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 531 HSGYNGYSGQSSTNSGHTYDSSGRSQGYT 617
           ++GYN      S N+G+TY     S GYT
Sbjct: 63  NNGYNNGCSGCSNNNGYTYYYPSNSNGYT 91


>Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical
           protein C01G10.5 protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 498 YSASDSQSSRYHSGYNGYSGQ-SSTNSGHTYDSSGRSQGYT 617
           Y  +++    Y++GY  Y    ++ N+G+ YD+   + GYT
Sbjct: 26  YPNNNNNGYNYNNGYTTYYYYPNNNNNGYYYDNGYNNNGYT 66


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 495 TYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQ 608
           T  + ++ S + H+  N Y+  ++ N GH  D   R++
Sbjct: 322 TVDSHNNSSGQLHNSINNYTASTNGNQGHRLDGFFRNR 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,910
Number of Sequences: 27780
Number of extensions: 255361
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)