Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J07
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 314 LVVYSLLLIQKVFTGRVIMI*VTSKVAISKKAFLLM 421
           +V YS+L+I        ++I +T +  +SK    +M
Sbjct: 41  IVFYSVLMIISAIGNTTVLILITCRKRVSKSRIHIM 76


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 229 CARVQNSLPYFPSEHHKSQIYFLHPRNF 146
           CA ++ ++P FP       ++FL P  F
Sbjct: 193 CAMLKENMPEFPLYQLSCILFFLIPMVF 220


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 570 LWKTVLNIRCIHCDILSFENHWRCR 496
           +W+  LN R +   + S  N W CR
Sbjct: 907 VWQVTLNARLVELSLGS--NPWSCR 929


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 513 SQSSRYHSGYNGYSGQSSTN 572
           S +  Y++ YN Y+   +TN
Sbjct: 89  SNNYNYNNNYNNYNNNYNTN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,678
Number of Sequences: 438
Number of extensions: 3303
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)