Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J07
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04800.1 68414.m00476 glycine-rich protein 35 0.054
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 30 1.2
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 28 4.7
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 28 6.2
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 28 6.2
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 27 8.2
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 27 8.2
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 27 8.2
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ... 27 8.2
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 34.7 bits (76), Expect = 0.054
Identities = 23/79 (29%), Positives = 29/79 (36%)
Frame = +1
Query: 175 GFYGAQRGNMGGNFERAHNMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVY 354
G G G +GG F G + GG K V G G+G G F KGV
Sbjct: 77 GSVGGFGGGIGGGFGGGGFGGGAGKGVDGGFGKGVDGGAGKGVDGGAGKGFDGGVGKGVD 136
Query: 355 GSGNYDLSNLEGRNFQEGV 411
G G+ F+ G+
Sbjct: 137 GGAGKGFDGGVGKGFEGGI 155
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 531 HSGYNGYSGQSSTNSGHTYDSSGRSQGYT 617
+SG GY+ Q +NSG+++ S GYT
Sbjct: 295 YSGPGGYNSQQQSNSGNSFGSQRGGGGYT 323
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 504 ASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
+S S ++ Y+GY+ +++ H Y ++G S Y+G
Sbjct: 90 SSTSGTANVAQDYSGYTPYQTSSDPHNYSNTGYSNYYSG 128
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYT 617
G T++ S S+ + + ++G +ST S H+ + R GY+
Sbjct: 98 GSTHNGHSSGSNHSSATGSTHNGHTSTGSNHSSGNGSRHNGYS 140
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 501 SASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
S+S + GY G SG+S G S G S Y+G
Sbjct: 525 SSSGRSGGGSYGGYGGSSGRSGGGGGSYGGSGGSSSRYSG 564
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 489 GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 620
G TY S S+ YNG SG S N TY SS + G+ G
Sbjct: 211 GNTYGEGSSASAGAVGDYNGSSGYGSAN---TYGSS--NGGFAG 249
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 480 IK*GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQG 611
IK R YS+SDS SS S + +S S +Y+SS S G
Sbjct: 221 IKRKRRYSSSDSYSS---SSDSDSDSESEAYSSSSYESSSSSDG 261
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 480 IK*GRTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQG 611
IK R YS+SDS SS S + +S S +Y+SS S G
Sbjct: 221 IKRKRRYSSSDSYSS---SSDSDSDSESEAYSSSSYESSSSSDG 261
>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
putative very strong similarity to PIF3 like basic Helix
Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
GI:22535494
Length = 346
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 244 LNHPYCARVQNSLPYFPSEHHKSQ 173
LNHP +QNS P+ P+E+ Q
Sbjct: 287 LNHPGLMPMQNSAPFIPTENCSPQ 310
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,930
Number of Sequences: 28952
Number of extensions: 238595
Number of successful extensions: 674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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