Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J06
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 32 0.39
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.8
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0) 28 6.4
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 8.5
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 296 ALDFYQTALRDPAFYQLYYRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 475
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 476 YSQ 484
Y Q
Sbjct: 240 YGQ 242
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 31.9 bits (69), Expect = 0.39
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = +3
Query: 258 HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILKRNFISSALKS 437
+L HST T S L T T +++++T + TLTH +IT S I L
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 438 MMLSLRN*SHSLTIANLMPLTVYS*PKKRLRLVTHTT 548
+ L+ +HS + + + + +TH+T
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 336 SISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 503
++++ T + +TLTHS++T + N S L L+ N +HS LT + L LT+
Sbjct: 1 TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +3
Query: 225 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 392
+ L+ + + L H T T S LT T H H +++++T + TLTHS++T
Sbjct: 40 LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99
Query: 393 SLILKRNFISSALKSMMLSLRN*SHS 470
S + S L ++ +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 222 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 395
L L+L ++ HL +ST T S LT T H +++Y T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105
Query: 396 LILKRNFISSALKSMMLSLRN*SH 467
+ S + L+ N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 237 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 329
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +2
Query: 86 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 217
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
Length = 474
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 413 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 505
LH G K++D VVE + F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 143 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRC 21
P H NQ C IC+ G KS KCP L S RC
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARC 285
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 101 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 241
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,978,570
Number of Sequences: 59808
Number of extensions: 368650
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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