Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J06
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical...    30   1.4  
AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical...    30   1.4  
AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical...    30   1.4  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    29   2.4  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    29   2.4  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    29   2.4  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   4.2  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   4.2  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   5.6  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    27   7.4  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    27   7.4  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7c protein.
          Length = 187

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 189 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 338
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150


>AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7b protein.
          Length = 214

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 189 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 338
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177


>AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7a protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 189 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 338
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 195 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 353
           K+ Q+  ++L K++       H + STS+   P  +TF+ P FE   + S +T
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377


>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 59 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 565 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 416
           W+TNL   +    NL+F  +Y + G  L ++ +    + +++  F   EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 134 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 48
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 43  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 134 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 48
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 35  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 264 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 389
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 264 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 389
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 131 HDEKAINFVGNYWQENADLYEEEV 202
           HDE A+N    Y+Q + DL E++V
Sbjct: 75  HDELAVNNADEYFQGDVDLSEQQV 98


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 66   KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 224
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 66   KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 224
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 105 NRMARKLISTMKRQLTLSETIG--KRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTS 278
           +++   +  T K     SET+   K+ P  MKK ++ +  +L K S ++     ++HS S
Sbjct: 498 DKLLESVQQTAKSVSQFSETLASVKKIPDAMKKNVKNVTLELNKRSESLNQSDAISHSAS 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,437,209
Number of Sequences: 27780
Number of extensions: 286283
Number of successful extensions: 900
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)