Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J06
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 33 0.14
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 33 0.18
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 0.98
At5g22540.1 68418.m02630 expressed protein contains Pfam profile... 29 1.7
At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 29 1.7
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro... 28 4.0
At1g71400.1 68414.m08246 disease resistance family protein / LRR... 28 4.0
At5g15510.1 68418.m01816 expressed protein 27 6.9
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi... 27 6.9
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ... 27 6.9
At1g17460.1 68414.m02141 myb family transcription factor contain... 27 9.1
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic... 27 9.1
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 33.1 bits (72), Expect = 0.14
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Frame = +2
Query: 167 WQENADLYEEEVTKDYQ-RSYEIVARHV---LGAAPKPFD---KHTFMPSALDFYQTALR 325
W L+ EE + Y+ Y+I A + GA+ K D T+ L + +
Sbjct: 139 WIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQ 198
Query: 326 DPAFYQLYYRIVGYI---NAFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQ 484
PA QL YR++G +A+ +YL Y K F + IND ++ + FF+ S+
Sbjct: 199 LPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSR 258
Query: 485 FDATNSVFLTKK 520
DA ++ + K+
Sbjct: 259 HDAVKALNIYKR 270
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 32.7 bits (71), Expect = 0.18
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Frame = +2
Query: 167 WQENADLYEEEVTKDYQ-RSYEIVARHVLGAAPKPFDKH-TFMPSALDFYQTALRDPAFY 340
W L+ EE + Y+ Y+I A + A+ H T M S D + PA
Sbjct: 139 WVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQL---PALQ 195
Query: 341 QLYYRIVGYIN---AFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQFDATN 499
QL YR++G A+ +YL Y K F + IND ++ + FF+ S+ DA
Sbjct: 196 QLLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVK 255
Query: 500 SVFLTKK 520
++ + K+
Sbjct: 256 ALNIYKR 262
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 114 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 257
AR++I T+KR + P+ + +++N L+KL A C Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766
>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 440
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 38 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 157
EA LD+ KTFV + + + + K F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256
>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
PF05249: Uncharacterised protein family (UPF0187)
Length = 410
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 93 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 272
K++ + ++ KLIS +K S+ I +R + K+ L N + S S++HL H
Sbjct: 49 KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103
Query: 273 TSTPSCPVRLTFTKPHF 323
+S+PS V L+ P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120
>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
P450 76A2, eggplant, PIR:S38534
Length = 516
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 116 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 214
+K FH EKA G + +E ++ E +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278
>At1g71400.1 68414.m08246 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 847
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 14 HLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 193
H H+ ++++R +DI F +L F ++ K + E+ ++ +W+ Y
Sbjct: 582 HRHASIGFQSLRIIDISHNNFSGTLPPYYFSNW-KDMTTLTEEMDQYMTEFWRYADSYYH 640
Query: 194 --EEVTKDYQRSYEIVAR 241
E V K S+E + R
Sbjct: 641 EMEMVNKGVDMSFERIRR 658
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +2
Query: 119 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 289
+ D+ + ++F+ Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450
Query: 290 PSALDFYQTALRDPAFY 340
P + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467
>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 904
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 359 QSCNIADRMQGLEVRFGKSQAHW 291
Q C++ D++Q L R KS HW
Sbjct: 640 QKCDLQDKLQHLYYRIRKSGIHW 662
>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
TIGR01640 : F-box protein interaction domain;
Length = 364
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -1
Query: 571 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 431
ESW NL ++ ++ +F Q Y V G ++ + V E N+ + IDF
Sbjct: 39 ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88
>At1g17460.1 68414.m02141 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 604
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 48 GSWTFLKRLSYSPY 89
G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530
>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
Length = 344
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 293 SALDFYQTALRDPAFYQLYYRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 472
SA ++ A+ +L ++ +A KH+ P P + GV +N V V F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240
Query: 473 DYSQFDATNSVFLTK 517
YS ++++ S LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,459,176
Number of Sequences: 28952
Number of extensions: 254268
Number of successful extensions: 706
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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