Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J05
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    28   0.71 
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    27   2.2  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.0  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   6.6  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    25   8.7  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -1

Query: 309 SGVTATAWTDGFRRHWYKRAVVASDLAPRTHLLKYPGLKHYAPIRL 172
           SG++++   +   RH  KR+  ++D AP +H++    L+  + I+L
Sbjct: 432 SGLSSSTSEESLNRHISKRSSNSNDTAPSSHIIADKNLEPTSNIQL 477


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 191 CFRPGYFKRCVRGARSEATTARLYQWRRNPSVHAVA 298
           CFRP  FK C++  +S+      Y +    ++ ++A
Sbjct: 272 CFRPVLFKNCLKTVKSKYGANLFYAYGPGTTMQSIA 307


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 328 INKGCIIRSNSHCVDGRIPPPLVQTGCCSF 239
           +  G + + N   V   +PP L+ T C +F
Sbjct: 455 VGTGNLFQPNLIAVQASVPPALIATSCSAF 484


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 276 FRRHWYKRAVVASDLAPRTHLLKYPGL 196
           FRR W K+    SDL  ++ L  +P L
Sbjct: 415 FRRGWVKQGYALSDLPFKSPLYPFPQL 441


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 209 FKRCVRGARSEATTARLYQWRRNPSV 286
           F   +RGAR    + RL +WR+N S+
Sbjct: 128 FMCTLRGAREAEQSLRLGKWRQNLSL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,465
Number of Sequences: 5004
Number of extensions: 38825
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)