Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J05
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0809 + 24814590-24816593                                         29   2.9  
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073...    27   6.6  

>06_03_0809 + 24814590-24816593
          Length = 667

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 254 RLYQWRRNPSVHAVAVTPD-NATLVDPDYWDLDVFEPTIADYDKFDLTLTKRISSYSD 424
           R ++WR N  +H V + PD       P  W L     T+AD D  D   +  +  Y +
Sbjct: 313 RRWRWRGNGELHDVPLAPDKEGAKATPPPWMLPT---TVADVDVRDAVGSMAVYEYGE 367


>07_03_1170 -
           24505743-24505875,24506087-24506475,24507133-24507369,
           24507967-24508136,24510196-24510316
          Length = 349

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 224 RGARSEATTARLYQWRRNPSVHAVAVTPDNATLVDPDYWDLDVFEPTIA 370
           RG    AT   L   ++   +  +    +   L + D +D D FEP IA
Sbjct: 29  RGCVVHATLRNLGDEKKTAPLRELPGAAERLVLFEADMYDADTFEPAIA 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,046,144
Number of Sequences: 37544
Number of extensions: 251560
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)