Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J05
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   3.9  
SB_25010| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_13071| Best HMM Match : AMOP (HMM E-Value=2.5)                      27   6.8  
SB_36302| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -3

Query: 307 RSNSHCVDGRIPPPLVQTGCCSF*SCSPNTSFKVSG 200
           R    C DG    PLV  G C   SC+ N    VSG
Sbjct: 418 RQCEECADGYYGNPLVPGGSCKPCSCNNNIDPTVSG 453


>SB_25010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 209 FKRCVRGARSEATTARLYQWRRNPSVHAVAVTPDNAT 319
           F+R  R  R E T  R  + + N  + AVAVTPD+AT
Sbjct: 231 FERIARRFRLENTFERQIRAKINTEM-AVAVTPDSAT 266


>SB_13071| Best HMM Match : AMOP (HMM E-Value=2.5)
          Length = 139

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 137 DVVAVFYCSDSTKRIGA*CFRPGYFKRCVRGARSEATTARLYQWRRNPSVHAVAVTPDNA 316
           ++V V+   D  K  G+     GY  R V+G RS+  T   Y  +R+   +A   + DNA
Sbjct: 66  NIVGVYVIKDR-KYCGSSRRIAGYSSRDVQGKRSKRHTDTFYNCKRHIERNAAVSSIDNA 124


>SB_36302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 209 FKRCVRGARSEATTARLYQWRRNPSVHAVAVTPDNAT 319
           F+R  R  R E T  R  + + N  + AVAVTPD+AT
Sbjct: 11  FERIARRFRLENTFERQIRAKINTEM-AVAVTPDSAT 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,338,915
Number of Sequences: 59808
Number of extensions: 299190
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)