Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J05
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   3.4  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   3.4  
Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical p...    27   6.0  
AF016418-3|AAK18905.1|  210|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 209  FKRCVR-GARSEATTARLYQWRRNPSVHAVAVTPDNATLVDPDYWDLDVFE 358
            FK CV  GA +E +T R       P   + + T   A +   D+WD  VF+
Sbjct: 1066 FKTCVSDGANTECSTCRFIHVLVEPEWLSESFTLSLARMTVDDFWDPLVFQ 1116


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 209  FKRCVR-GARSEATTARLYQWRRNPSVHAVAVTPDNATLVDPDYWDLDVFE 358
            FK CV  GA +E +T R       P   + + T   A +   D+WD  VF+
Sbjct: 1066 FKTCVSDGANTECSTCRFIHVLVEPEWLSESFTLSLARMTVDDFWDPLVFQ 1116


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 209  FKRCVR-GARSEATTARLYQWRRNPSVHAVAVTPDNATLVDPDYWDLDVFE 358
            FK CV  GA +E +T R       P   + + T   A +   D+WD  VF+
Sbjct: 1066 FKTCVSDGANTECSTCRFIHVLVEPEWLSESFTLSLARMTVDDFWDPLVFQ 1116


>Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical
           protein F46B3.9 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -3

Query: 298 SHCVDGRIPPPLVQTGCCSF*SCSPNTSFKVSGSKTLCPDTFSRI*TIKNSD---HIAVD 128
           SHC +G   P  V    C++  CS      V      C      +  + + D   HI   
Sbjct: 183 SHCENGECVPDAVTENPCTWIKCSLGYHCAVVNGGGGCVPELRALENLPDLDQCIHIKCS 242

Query: 127 IVACAKRGKPTNKTKIYIC 71
           + +  + G+    TK +IC
Sbjct: 243 LGSHCENGQCVPGTKFFIC 261


>AF016418-3|AAK18905.1|  210|Caenorhabditis elegans Hypothetical
           protein C49G7.10 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 341 DLDVFEPTIADYDKFDLTLTKRISSYSDKNF 433
           D  VF+  +A Y K+ L   KR  + +DKN+
Sbjct: 2   DKTVFQQDLAPYVKYSLNKKKRWETGNDKNY 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,105,816
Number of Sequences: 27780
Number of extensions: 220297
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)