Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J05
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.15 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 203 GYFKRCVRGARSEATTARLYQWRRNPSVHAVAVTPDNATLVDPDY 337
           G  K+  + A +E     + Q+R  P VH    T   +  ++PD+
Sbjct: 79  GRTKKMAKHAAAELALRNIVQFRNTPEVHQAINTCQPSIPLEPDF 123


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 282 DGFRRHWYKRAVVASDLAPRTHL 214
           DG  R+W   +VV SD +  ++L
Sbjct: 277 DGRLRYWRTPSVVVSDYSDYSYL 299


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 299 VTPDNATLVDPDYW 340
           VTP+ + L DP+ W
Sbjct: 267 VTPNLSKLSDPEVW 280


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 299 VTPDNATLVDPDYW 340
           VTP+ + L DP+ W
Sbjct: 320 VTPNLSKLSDPEVW 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,114
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)