Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J05
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    30   0.79 
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t...    29   2.4  
At1g49510.1 68414.m05549 expressed protein                             28   4.2  
At1g52920.1 68414.m05984 lanthionine synthetase C-like family pr...    27   9.7  

>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes from
            this gene
          Length = 1035

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 114  AQA-TMSTAMWSLFFIVQILLNVSGHSVLDPDTLKDVFGEQDQKLQQPVCTSGGGIRP 284
            AQA  M   M + F +V  +L   GHS +   T  D+  E  + L++  CT G G+ P
Sbjct: 887  AQALAMKEVMKASFEVVLTVLLAGGHSRVFCRTDHDLIEEDFESLKKVYCTCGEGLIP 944


>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
           PBK1 protein (GI:3668141) [Homo sapiens]; weak
           similarity to 60S ribosomal protein L10a.
           (Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
          Length = 372

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 201 PDTLKDVFGEQDQKLQQPVCTSGGGIRPSTQ 293
           PD +K   G++ +KL++ +  SGGG +  T+
Sbjct: 340 PDIVKSKNGQKSKKLKKDIDESGGGFKAKTK 370


>At1g49510.1 68414.m05549 expressed protein
          Length = 240

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 PRFAQATMSTAMWSLFFIVQILLNVSGH 188
           P FA   +  A+WS+FF  +   N SG+
Sbjct: 203 PHFANGVLLRALWSMFFWYKKTRNTSGN 230


>At1g52920.1 68414.m05984 lanthionine synthetase C-like family
           protein contains Pfam domain, PF05147: Lanthionine
           synthetase C-like protein
          Length = 401

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 168 LLNVSGHSVLDPDTLKDVFGEQDQKLQ 248
           ++NV  H+ L+PD +KDV G     +Q
Sbjct: 225 IMNVLMHTELEPDEIKDVKGTLSYMIQ 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,495,380
Number of Sequences: 28952
Number of extensions: 204694
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)