Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J04
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1092 + 34469732-34470118                                         33   0.16 
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639...    31   0.48 
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027...    28   5.9  
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667...    28   5.9  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    28   5.9  

>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 425 GAKLASLHPCICTREKDPVCGSDGVTY 345
           G   A L P  C R  DPVCG+DGVTY
Sbjct: 49  GGSEAQLCPVRCFRP-DPVCGADGVTY 74


>01_01_0010 -
           62670-62783,62877-63020,63339-63431,63665-63779,
           63902-64152,64248-64431,64694-64950
          Length = 385

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 355 PSLPQTGSFSRVHIHGCKLASLAPWHSPSCSIFRDGIIFWVHSSEHLLA*VFPL 516
           PS      FS V I+ C L  L   +S S    +DG++F+ +   H LA + PL
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITPL 242


>08_01_1007 -
           10201181-10201298,10202180-10202484,10202577-10202726,
           10202954-10202956
          Length = 191

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = -1

Query: 503 YANKCS--LECTQKIIPSL----KMEHDGECQGAKLASL 405
           + NKC   +EC QK  P L    K+  DG CQGA L  L
Sbjct: 125 FENKCKELIEC-QKASPQLLLTAKVTQDGSCQGAILDQL 162


>07_03_0823 +
           21765960-21766064,21766166-21766327,21766616-21766741,
           21766831-21766956,21767519-21767698,21768204-21768452
          Length = 315

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 117 LK*KINSIKMLNYEYVQINKNYILCV 40
           LK K   +K++N+E  ++ KN +LCV
Sbjct: 275 LKAKDRVMKLMNHENAEVRKNALLCV 300


>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
            6071030-6071211,6071331-6071422,6071505-6071835,
            6071960-6072170,6072551-6072665,6073677-6073838,
            6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 227  CSNGFSFPPPTLCYYRKDRCVR-CSSLVWTVTRIL 328
            CS G S   P + Y R  RC++ CS L   + R+L
Sbjct: 1024 CSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLL 1058


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,303,301
Number of Sequences: 37544
Number of extensions: 288767
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)