Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J03
         (589 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle glycop...    30   5.3  
BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle glycop...    30   5.3  
BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle glycop...    30   5.3  
BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle glycop...    30   5.3  
AB007890-1|BAA24860.3| 1506|Homo sapiens KIAA0430 protein protein.     30   5.3  

>BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 54  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 215
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 54  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 215
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 54  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 215
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 54  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 215
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>AB007890-1|BAA24860.3| 1506|Homo sapiens KIAA0430 protein protein.
          Length = 1506

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +3

Query: 285  YEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFLYAYYIAVIQRNDT 464
            Y   +F     EE + L  L+ +AK+  +   +  + ++ L+E    Y  Y+    +  T
Sbjct: 1232 YLVEVFTNDKMEECVKLTSLYLFAKNVRSLLHTYHYQQIFLHEFSMAYTKYVGETLQPKT 1291

Query: 465  HG 470
            +G
Sbjct: 1292 YG 1293


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,083,167
Number of Sequences: 237096
Number of extensions: 1635717
Number of successful extensions: 3166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3166
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)