Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J01
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   1.9  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   5.8  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   7.7  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.7  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 44  LNQIG-RQALTPLEVWLHPNYNDD-YSAADLAIMKF--NRFEYTEYVQPICLWGPVYDKT 211
           L  IG R+ LT L + + P YN D  SA D+ I+ F  N + Y+   + I  W  V +  
Sbjct: 436 LQAIGTRKILTQLSINMIPRYNQDNCSAGDIYILCFSENCWLYSVLQKTIDHW--VNENV 493

Query: 212 NLFGKEATVV 241
            LF K+  ++
Sbjct: 494 ELFYKKFEIL 503


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 EYTEYVQPICLWGPVYDK 208
           +YTE    +CL+G VYDK
Sbjct: 336 DYTEMYGSLCLFGKVYDK 353


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 185 LWGPVYDKTNLFGKEATVVGFGSTEANR 268
           LW PV++    F K+  V   G+ E+ R
Sbjct: 186 LWTPVFESEARFSKKQPVPSLGTIESTR 213


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 441 LELYSLIIKSVGSFEVYCQNAECHRV 518
           + LY L I  V S E +C++ + HRV
Sbjct: 378 VRLYKLSISVVESSEYWCRSRKFHRV 403


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 304 HHCISRSQDIRLPVC 260
           H CI RS D   P+C
Sbjct: 260 HRCIERSTDCNCPIC 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,039
Number of Sequences: 5004
Number of extensions: 47609
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)