Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J01
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0927 + 7332980-7333186,7334511-7335269,7336287-7336442,733...    29   3.4  
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868...    28   5.9  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    27   7.8  

>01_01_0927 +
           7332980-7333186,7334511-7335269,7336287-7336442,
           7336615-7337538,7338905-7339201
          Length = 780

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +2

Query: 203 DKTNLFGKEATVVGFGSTEANRQ-SDILRSANTMVQEDTVCVNFEPNVYRKLMNEFTFCA 379
           DK +   + + VVG GS    +  S+   S ++M+  D       PN+ R L  E     
Sbjct: 162 DKKSFLSELSEVVGIGSASIKQGLSNFAASHSSMITNDNGGPYKSPNLRRSLTTEMDKYG 221

Query: 380 GYGPESAINPRNGDSG 427
            Y P          SG
Sbjct: 222 RYDPSEIQGESRSSSG 237


>01_03_0084 -
           12286416-12286514,12286632-12286683,12286771-12286871,
           12287498-12287650,12287703-12287762,12287872-12287998,
           12288581-12288708,12289196-12289291,12289473-12289526,
           12289603-12289689,12290954-12291057,12291163-12291246,
           12291374-12291422,12291523-12291886,12292186-12292226
          Length = 532

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 366 NSFINFR*--TFGSKLTHTVSSCTIVLADLRISDCLFASVDPNP 241
           NS++N     T GS++    S CT+ + D + +DCL     P P
Sbjct: 353 NSYVNCAIFSTDGSRVITASSDCTVKVWDTKTTDCLQTFKPPPP 396


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 194 PVYDKTNLFGKEATVVGFGSTEANRQSDI-LRSANTMVQ 307
           P Y+  N+ GK A  VGF + E     D+   SA T+ Q
Sbjct: 401 PAYEVVNIIGKGARTVGFWTPEFGITQDLNAGSAKTLRQ 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,652,186
Number of Sequences: 37544
Number of extensions: 297992
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)