Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J01
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51270.1 68418.m06356 protein kinase family protein contains ...    29   2.8  
At5g48440.2 68418.m05990 FAD-dependent oxidoreductase family pro...    28   3.7  
At5g48440.1 68418.m05989 FAD-dependent oxidoreductase family pro...    28   3.7  
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)...    28   3.7  
At2g39350.1 68415.m04830 ABC transporter family protein                27   6.5  
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    27   8.7  

>At5g51270.1 68418.m06356 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 819

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 119 AADLAIMKFNRFEYTEYVQPICLWGPVYDKTNLFGKEATVVGFG 250
           AAD    KF  ++ T  V  +C   P Y +T     ++ V  FG
Sbjct: 609 AADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFG 652


>At5g48440.2 68418.m05990 FAD-dependent oxidoreductase family
           protein low similarity to hydrogen cyanide synthase HcnC
           from Pseudomonas fluorescens [GI:3220203]; contains Pfam
           profile PF01266 FAD dependent oxidoreductase
          Length = 333

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 KTNLFGKEATVVGFGSTEANRQSDILRSAN 295
           K NL+GK+AT+V  G    +   ++L+  N
Sbjct: 155 KRNLYGKKATIVAAGCWSGSLMHELLKDCN 184


>At5g48440.1 68418.m05989 FAD-dependent oxidoreductase family
           protein low similarity to hydrogen cyanide synthase HcnC
           from Pseudomonas fluorescens [GI:3220203]; contains Pfam
           profile PF01266 FAD dependent oxidoreductase
          Length = 367

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 KTNLFGKEATVVGFGSTEANRQSDILRSAN 295
           K NL+GK+AT+V  G    +   ++L+  N
Sbjct: 155 KRNLYGKKATIVAAGCWSGSLMHELLKDCN 184


>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
            family protein similar to cytosolic leucyl-tRNA
            synthetase [Candida albicans] GI:9858190; contains Pfam
            profile PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1084

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 134  IMKFNRFEYTEYVQPICLWGPVYDKTNLFGKEATVVGFGSTEANRQSDILRSANTMVQED 313
            ++KF   + T  + PIC     Y    +  KE  V+  G   +N    +L+SAN  +Q+ 
Sbjct: 848  LLKFMDVQ-TRLIVPICPHFADYVWRKVLNKEGCVLTAGWPPSNEPDLVLKSANKYLQDS 906

Query: 314  TV 319
             V
Sbjct: 907  IV 908


>At2g39350.1 68415.m04830 ABC transporter family protein 
          Length = 740

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 32  NYKDLNQIGRQALTPLEVWLHPNYNDDYSAADLAIMKFNRFEYTEYVQP 178
           N  D+ ++     TP+   L+ +YND Y      ++ F+   Y   V+P
Sbjct: 32  NVSDVRKMAIGDETPVHESLNQDYNDGYMRTVPFVLSFDNLTYNVSVRP 80


>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +2

Query: 68  LTPLEVWLHPNYNDDYSAADLAIMKFNRFEYTEYVQPICLWGPVYDKTNLFGKEATVVGF 247
           L+ L+ + H N N   + A L +   N     +    + L G   DK +   +   ++G 
Sbjct: 431 LSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKEDSSVRIGAIMGL 490

Query: 248 GSTEANRQSDILRSANTMVQED 313
           G + A  Q+D +R+  + +  D
Sbjct: 491 GISYAGSQNDQIRNKLSPILND 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,990,679
Number of Sequences: 28952
Number of extensions: 244917
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)