BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0002_J01 (564 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g51270.1 68418.m06356 protein kinase family protein contains ... 29 2.8 At5g48440.2 68418.m05990 FAD-dependent oxidoreductase family pro... 28 3.7 At5g48440.1 68418.m05989 FAD-dependent oxidoreductase family pro... 28 3.7 At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)... 28 3.7 At2g39350.1 68415.m04830 ABC transporter family protein 27 6.5 At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R... 27 8.7 >At5g51270.1 68418.m06356 protein kinase family protein contains Pfam profile: PF00069 Eukaryotic protein kinase domain Length = 819 Score = 28.7 bits (61), Expect = 2.8 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +2 Query: 119 AADLAIMKFNRFEYTEYVQPICLWGPVYDKTNLFGKEATVVGFG 250 AAD KF ++ T V +C P Y +T ++ V FG Sbjct: 609 AADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFG 652 >At5g48440.2 68418.m05990 FAD-dependent oxidoreductase family protein low similarity to hydrogen cyanide synthase HcnC from Pseudomonas fluorescens [GI:3220203]; contains Pfam profile PF01266 FAD dependent oxidoreductase Length = 333 Score = 28.3 bits (60), Expect = 3.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 206 KTNLFGKEATVVGFGSTEANRQSDILRSAN 295 K NL+GK+AT+V G + ++L+ N Sbjct: 155 KRNLYGKKATIVAAGCWSGSLMHELLKDCN 184 >At5g48440.1 68418.m05989 FAD-dependent oxidoreductase family protein low similarity to hydrogen cyanide synthase HcnC from Pseudomonas fluorescens [GI:3220203]; contains Pfam profile PF01266 FAD dependent oxidoreductase Length = 367 Score = 28.3 bits (60), Expect = 3.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 206 KTNLFGKEATVVGFGSTEANRQSDILRSAN 295 K NL+GK+AT+V G + ++L+ N Sbjct: 155 KRNLYGKKATIVAAGCWSGSLMHELLKDCN 184 >At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V) family protein similar to cytosolic leucyl-tRNA synthetase [Candida albicans] GI:9858190; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) Length = 1084 Score = 28.3 bits (60), Expect = 3.7 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +2 Query: 134 IMKFNRFEYTEYVQPICLWGPVYDKTNLFGKEATVVGFGSTEANRQSDILRSANTMVQED 313 ++KF + T + PIC Y + KE V+ G +N +L+SAN +Q+ Sbjct: 848 LLKFMDVQ-TRLIVPICPHFADYVWRKVLNKEGCVLTAGWPPSNEPDLVLKSANKYLQDS 906 Query: 314 TV 319 V Sbjct: 907 IV 908 >At2g39350.1 68415.m04830 ABC transporter family protein Length = 740 Score = 27.5 bits (58), Expect = 6.5 Identities = 13/49 (26%), Positives = 23/49 (46%) Frame = +2 Query: 32 NYKDLNQIGRQALTPLEVWLHPNYNDDYSAADLAIMKFNRFEYTEYVQP 178 N D+ ++ TP+ L+ +YND Y ++ F+ Y V+P Sbjct: 32 NVSDVRKMAIGDETPVHESLNQDYNDGYMRTVPFVLSFDNLTYNVSVRP 80 >At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (RPN1) contains an APC-complex (cyclosome) and proteasome component repeat ( PS50248) Length = 891 Score = 27.1 bits (57), Expect = 8.7 Identities = 19/82 (23%), Positives = 36/82 (43%) Frame = +2 Query: 68 LTPLEVWLHPNYNDDYSAADLAIMKFNRFEYTEYVQPICLWGPVYDKTNLFGKEATVVGF 247 L+ L+ + H N N + A L + N + + L G DK + + ++G Sbjct: 431 LSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKEDSSVRIGAIMGL 490 Query: 248 GSTEANRQSDILRSANTMVQED 313 G + A Q+D +R+ + + D Sbjct: 491 GISYAGSQNDQIRNKLSPILND 512 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,990,679 Number of Sequences: 28952 Number of extensions: 244917 Number of successful extensions: 499 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 492 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 499 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1082538160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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