Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I24
         (167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    27   0.33 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   2.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    24   3.1  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   3.1  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    23   4.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    23   5.4  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    23   7.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    22   9.4  
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    22   9.4  

>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 98  ITVDVSQGYEAQ*NSQDCEFRHF 30
           + VDV +G+E   +++DCEF+ F
Sbjct: 162 MAVDVPEGFELLGSTEDCEFQIF 184


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 21  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 119
           T  E+  FTIL  + GL+   + N +   +Y C
Sbjct: 684 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 716


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 27  NEMSKFTILAVLLGLVALTYVNGNKVKSY 113
           NE++  +I +    L+   Y NGN++ S+
Sbjct: 864 NELANLSISSTAQVLLETLYANGNRLSSF 892


>SPAC17G8.13c |mst2||histone acetyltransferase
          Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 97 LPLT*VKATRPSKTARIVNFD 35
          +P T +K+T  SKT  I+ FD
Sbjct: 1  MPATILKSTASSKTLLIIKFD 21


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 45  TILAVLLGLVALTYVNGNKVKSYICQG-YYGCEKCCV 152
           T+L + L LV+ T  +    +   C G YY    CCV
Sbjct: 9   TVLTLALSLVSKTSASQCSPRYGTCGGIYYDGPTCCV 45


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 125 ILRLREMLCSPW 160
           +LRLR+  C PW
Sbjct: 553 LLRLRQFCCHPW 564


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 125 ILRLREMLCSPW 160
           +LRLR+  C PW
Sbjct: 693 LLRLRQACCHPW 704


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 35  VEIHNPGCFTGPRSLDLRQR 94
           VE+ N   FT P   DLR++
Sbjct: 572 VEVLNNNLFTAPELYDLRKK 591


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 99  KVKSYICQGYYGCEKCCVHLG 161
           KVK  I  G+YGC      LG
Sbjct: 126 KVKHIIVCGHYGCGGVAAALG 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,912
Number of Sequences: 5004
Number of extensions: 9000
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)