Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I24
         (167 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           26   3.6  
11_01_0308 + 2307623-2307697,2308554-2308790,2310109-2310282           25   6.2  
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089           25   6.2  
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990...    25   8.2  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 24  RNEMSKFTILAVLLGLVALTYVNGNKVKSYICQ 122
           RN M    +LA  LGLV L       +KSY C+
Sbjct: 411 RNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>11_01_0308 + 2307623-2307697,2308554-2308790,2310109-2310282
          Length = 161

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 101 SEVLHMPRILRLREMLCSPWFR 166
           S +LH  R+ R+R+ML  P +R
Sbjct: 117 SMILHQDRLRRVRQMLTRPRYR 138


>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
          Length = 495

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 24  RNEMSKFTILAVLLGLVALTYVNGNKVKSY-ICQGYYGCEKCC 149
           R   + +T LAVL G       +G  VKS  + +G  GC++CC
Sbjct: 329 RGATAAYTCLAVLDG-------HGGAVKSLALARGGAGCDRCC 364


>03_02_0619 +
           9904405-9904586,9905315-9906764,9907320-9907509,
           9909578-9910164
          Length = 802

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 44  HNPGCFTGPRSLDLRQR**SEVLHMPR 124
           H+PGC  GP+  D  +R  +++   PR
Sbjct: 674 HSPGCPVGPQVFDRLERKYNKISAWPR 700


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,268,088
Number of Sequences: 37544
Number of extensions: 58898
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 255393516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)