Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I24
         (167 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)                     27   2.4  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       26   5.4  
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.4  
SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)                      25   9.5  
SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_21487| Best HMM Match : MAM (HMM E-Value=0)                         25   9.5  
SB_20435| Best HMM Match : C1_4 (HMM E-Value=1.8)                      25   9.5  

>SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)
          Length = 146

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 149 TAFLATVVSLAYVGLHFITVDVSQGYEAQ*NSQDCEFRHFVPRSL 15
           +AF+ T+  L     +F  + +S GY+   + Q CE+R +  + L
Sbjct: 28  SAFITTLCQLKDAIYYFNDMTLSAGYKRCSSRQKCEYRMYKKKEL 72


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 81  TYVNGNKVKSYICQGYYGCEKCCVHL 158
           T        S +CQ  YG EK C +L
Sbjct: 365 TIATNRSASSNVCQSSYGSEKLCDYL 390


>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 125 SLAYVGLHFITVDVSQGY 72
           S+A  GL  IT+DVS GY
Sbjct: 355 SIARKGLEVITIDVSSGY 372


>SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)
          Length = 212

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 93  GNKVKSYICQGYYGCEKCCVHLGSG 167
           GNK   +  +   GC KC VHL  G
Sbjct: 173 GNKAVKHAKETRNGCRKCDVHLCVG 197


>SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 93  GNKVKSYICQGYYGCEKCCVHLGSG 167
           GNK   +  +   GC KC VHL  G
Sbjct: 240 GNKAVKHAKETRNGCRKCDVHLCVG 264


>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
          Length = 874

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 81  TYVNGNKVKSYICQGYYG 134
           T V G KV+ ++C G YG
Sbjct: 837 TCVTGCKVRMHVCHGMYG 854


>SB_20435| Best HMM Match : C1_4 (HMM E-Value=1.8)
          Length = 88

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 93  GNKVKSYICQGYYGCEKCCVHLGSG 167
           GNK   +  +   GC KC VHL  G
Sbjct: 49  GNKAVKHAKETRNGCRKCDVHLCVG 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,095,586
Number of Sequences: 59808
Number of extensions: 73018
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 16,821,457
effective HSP length: 35
effective length of database: 14,728,177
effective search space used: 294563540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)