Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I24
         (167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    27   1.3  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    27   1.3  
AC024776-18|AAL32241.2|  201|Caenorhabditis elegans Nuclear horm...    26   4.1  
U64598-7|AAK39218.3|  523|Caenorhabditis elegans Twik family of ...    25   7.2  
AY255664-1|AAQ96601.1|  523|Caenorhabditis elegans two-P domain ...    25   7.2  
AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical ...    25   7.2  
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 21  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 119
           T+ E SKF+I+  +   ++L  + G + K++IC
Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 21  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 119
           T+ E SKF+I+  +   ++L  + G + K++IC
Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136


>AC024776-18|AAL32241.2|  201|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 146 protein.
          Length = 201

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 73  TRPSKTARIVNFDISFLVHSLSL 5
           T PSKT   + FD+S+ V+ + L
Sbjct: 137 TEPSKTINDMEFDVSYTVNPMKL 159


>U64598-7|AAK39218.3|  523|Caenorhabditis elegans Twik family of
           potassium channelsprotein 28 protein.
          Length = 523

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 3   DSDSE*TRNEMSKFTILAVLLGLVALTYVNGNKVKSY 113
           DSDSE +  +  +  +  VLL L+A T + G   +S+
Sbjct: 275 DSDSEDSAGDELRIPVFMVLLVLLAYTAIGGFLFQSW 311


>AY255664-1|AAQ96601.1|  523|Caenorhabditis elegans two-P domain K
           channel protein.
          Length = 523

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 3   DSDSE*TRNEMSKFTILAVLLGLVALTYVNGNKVKSY 113
           DSDSE +  +  +  +  VLL L+A T + G   +S+
Sbjct: 275 DSDSEDSAGDELRIPVFMVLLVLLAYTAIGGFLFQSW 311


>AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical
           protein Y87G2A.1 protein.
          Length = 780

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 95  TVDVSQGYEAQ*NSQDCEFRHFVPRSLT 12
           TV +    E Q +  D E RHF PRS T
Sbjct: 397 TVTIDYCLEHQQHGYDLEPRHFGPRSAT 424


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 15  E*TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 119
           E T  E+  FT+L V  GL+   + N +   +Y C
Sbjct: 666 ETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC 700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,711,093
Number of Sequences: 27780
Number of extensions: 52321
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)