Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I24
         (167 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   0.79 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    18   9.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 24  RNEMSKFTILAVLLGLV 74
           +N +  FTI AVL+GL+
Sbjct: 62  KNMLLVFTIAAVLVGLI 78


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 56  SQDCEFRHFVPRSLTV 9
           S  CE R F P+S  V
Sbjct: 413 SGKCEHRPFEPKSTAV 428


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 25  GTKCRNSQSW 54
           G KC N ++W
Sbjct: 764 GCKCYNDRTW 773


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +3

Query: 96  NKVKSYICQGYYGC 137
           NK+ SY+  G   C
Sbjct: 421 NKLTSYVISGIVKC 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,973
Number of Sequences: 438
Number of extensions: 577
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)