Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I24
         (167 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41590.1 68418.m05053 hypothetical protein contains Pfam prof...    27   1.7  
At2g05530.1 68415.m00585 glycine-rich protein                          27   2.2  
At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical ...    27   2.2  
At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative s...    26   3.9  
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to...    25   6.8  
At1g54115.1 68414.m06169 cation exchanger, putative                    25   8.9  

>At5g41590.1 68418.m05053 hypothetical protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 221

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 39  KFTILAVLLGLVALTYVNG-NKVKSYICQGYYGCEKC-CVHL 158
           K  IL+    ++A  Y    +K  SYI +G Y C+ C  VH+
Sbjct: 129 KMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIVHV 170


>At2g05530.1 68415.m00585 glycine-rich protein 
          Length = 115

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 120 QGYYGCEKCCVHLG 161
           +GY+GC +CC + G
Sbjct: 93  RGYHGCSRCCSYAG 106


>At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical to
           cDNA glycine-rich protein 3 short isoform (GRP3S)
           GI:4206766
          Length = 116

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 120 QGYYGCEKCCVHLG 161
           +GY+GC +CC + G
Sbjct: 94  KGYHGCSRCCSYAG 107


>At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative
           similar to SP|P22276 DNA-directed RNA polymerase III 130
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 1150

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 21  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 119
           T  E+  FTIL V+ GL+   + N +   +Y C
Sbjct: 666 THIEIEPFTILGVVAGLIPYPHHNQSPRNTYQC 698


>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
           glycine-rich protein; atGRP (GI:259447) [Arabidopsis
           thaliana]
          Length = 145

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 120 QGYYGCEKCCVHLG 161
           +GY GC +CC + G
Sbjct: 123 RGYNGCSRCCSYAG 136


>At1g54115.1 68414.m06169 cation exchanger, putative
          Length = 644

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 42  FTILA-VLLG--LVALTYVNGNKVKSYIC 119
           F IL  +LLG  LVAL Y+ GN    Y C
Sbjct: 132 FKILGYILLGVWLVALFYLLGNTAADYFC 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,410
Number of Sequences: 28952
Number of extensions: 48025
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,070,560
effective HSP length: 36
effective length of database: 11,028,288
effective search space used: 209537472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)