Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I23
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    24   7.5  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   9.8  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   9.8  

>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 189 PFRFRLYIIANNRPIILHVLVH-IEVQLP 106
           PFRF L+     RP+++   VH  ++ LP
Sbjct: 142 PFRFALFFSGYFRPLLMDGAVHATKLDLP 170


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +3

Query: 189 AHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDR 302
           A +++ GY   C +     P  F +  +VC+ A   ++
Sbjct: 621 AFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEK 658


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 228 RKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIP 335
           +K     +LF  +ND+  +A+ +  S+W      IP
Sbjct: 83  KKLMNCKYLFMPINDLDKHAAGSGGSHWSLMVASIP 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,830
Number of Sequences: 5004
Number of extensions: 27409
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)