Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I23
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747...    28   1.7  
04_04_0439 - 25207950-25209629                                         27   3.9  
11_06_0106 + 20181197-20181535,20188754-20188868,20188929-201892...    26   8.9  
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    26   8.9  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    26   8.9  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    26   8.9  

>02_03_0273 +
           17173983-17174339,17174423-17174575,17174638-17174700,
           17174943-17175026,17175120-17175242,17175466-17175519,
           17175669-17175764,17176163-17176258,17177179-17177324,
           17178503-17178632,17178697-17179272,17179364-17179462,
           17179535-17179687,17179794-17180558,17181384-17181683
          Length = 1064

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 1   EKSVLLEEMAHLAHQVHH 54
           EK VLLEE+ HL +Q+H+
Sbjct: 745 EKEVLLEEIQHLKNQLHY 762


>04_04_0439 - 25207950-25209629
          Length = 559

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 5   NRYYWKKWPTWPTRCTMRHYRLLN-WYIIS 91
           NRYY  KW TW    +++H    N W I+S
Sbjct: 505 NRYYDHKWSTW--IASLKHNYFSNPWAIVS 532


>11_06_0106 +
           20181197-20181535,20188754-20188868,20188929-20189200,
           20189278-20189416,20189534-20189842,20190263-20190579,
           20190907-20191080
          Length = 554

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 5   NRYYWKKWPTWPTRCTMRHYRLLNWYIISATQPK--GSCTSM 124
           N  +  K+P++  RC    +  L W   S T P   G+CTS+
Sbjct: 315 NNSFSGKFPSFLQRCFFLSFLDLAWNEFSGTLPMWIGNCTSL 356


>06_03_0715 -
           23823427-23823525,23823616-23823822,23823907-23824017,
           23824124-23824322,23824410-23824495,23824940-23825098,
           23825204-23825302,23825385-23826578,23826666-23826734,
           23828042-23828812
          Length = 997

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 180 FRLYIIANNRPIILHVLVHIEVQLPFGCVALIIYQLS 70
           +  +++AN  P ++  + +IE+Q P  CV+ I   LS
Sbjct: 841 YSAFLMAN--PRLMEPVYYIEIQTPIDCVSAIYTVLS 875


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +2

Query: 137 CKIMGRLFAIIYRRKRKGT*PRSRICRFMRTKVQYYAIXXXXXXXXXXXXXXXXXXXXVI 316
           CK++    + I+RRK KG+   ++IC  + +    Y +                     I
Sbjct: 136 CKLVLGSSSSIFRRKNKGSKTATKICECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESI 195

Query: 317 NRSTYSN 337
           + ST S+
Sbjct: 196 SSSTVSS 202


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 154 PSHNFTCPGSH*GTTSLWLCRTN 86
           PSH+    G H GT +LW    N
Sbjct: 753 PSHDMILAGCHDGTVALWKFSAN 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,900,921
Number of Sequences: 37544
Number of extensions: 172271
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)