Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I23
(342 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 4e-33
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 9e-31
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 109 4e-25
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 62 2e-10
SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 28 1.7
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 2.3
SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59) 26 9.2
SB_33493| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 136 bits (329), Expect = 4e-33
Identities = 57/88 (64%), Positives = 69/88 (78%)
Frame = +3
Query: 78 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 257
G L RHSQ VP+C LW+GYSLLY+ GNE+AH QDLG GSC+++FSTMPFLF
Sbjct: 1574 GFFLTRHSQTVRVPRCPEDRPPLWEGYSLLYVQGNERAHGQDLGSPGSCIQRFSTMPFLF 1633
Query: 258 CDLNDVCNYASRNDRSYWLSTGQPIPMM 341
C++N+VCN ASRND S+WLST +PIPMM
Sbjct: 1634 CNINNVCNLASRNDYSFWLSTPEPIPMM 1661
Score = 58.0 bits (134), Expect = 2e-09
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 54 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 230
CA + + ++ V HSQ VP C G LW GYS L++ Q L GSC+
Sbjct: 1718 CAVCEVSSHVMAV-HSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLE 1776
Query: 231 KFSTMPFLFCDLNDVCNYASRNDRSYWLST 320
F PF+ C C+Y + S+WL+T
Sbjct: 1777 DFRAHPFIECHGRGTCHYYG-STYSFWLAT 1805
Score = 34.3 bits (75), Expect = 0.026
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 54 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSLL 167
CA + + ++ V HSQ VP C G LW GYS L
Sbjct: 1675 CAVCEVSSHVMAV-HSQSITVPSCPSGWSPLWQGYSFL 1711
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 128 bits (310), Expect = 9e-31
Identities = 51/88 (57%), Positives = 68/88 (77%)
Frame = +3
Query: 78 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 257
G +V+HSQ P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+
Sbjct: 1460 GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLY 1519
Query: 258 CDLNDVCNYASRNDRSYWLSTGQPIPMM 341
C++ CNYASRND SYWLST +PMM
Sbjct: 1520 CNIFGKCNYASRNDYSYWLSTDNQVPMM 1547
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 198 QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST 320
Q LG +GSC+ F PF C C+Y + N S+WL+T
Sbjct: 1592 QSLGSSGSCLESFRPNPFTECHGRGTCHYYA-NKYSFWLAT 1631
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 109 bits (263), Expect = 4e-25
Identities = 43/77 (55%), Positives = 60/77 (77%)
Frame = +3
Query: 78 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 257
G +V+HSQ P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+
Sbjct: 64 GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLY 123
Query: 258 CDLNDVCNYASRNDRSY 308
C++ CNYASRND S+
Sbjct: 124 CNIFGKCNYASRNDYSH 140
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 61.7 bits (143), Expect = 2e-10
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 78 GILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFL 254
G ++ HSQ +P C G LW GYS L++ Q LG +GSC+ F PF+
Sbjct: 34 GPVMAVHSQSTTLPTCPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLESFRPNPFI 93
Query: 255 FCDLNDVCNYASRNDRSYWLST 320
C C+Y + N S+WL+T
Sbjct: 94 ECHGRGTCHYYA-NKYSFWLAT 114
>SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 300
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 168 IIANNRPIILHVLVHIEVQLPFGCVALI 85
I+ NNR + LH+++ V +PF C++L+
Sbjct: 136 IVTNNRVVKLHIIIW-TVTVPFTCLSLL 162
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 168 YIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ 326
Y D + K + + G +G S PFL C L+ C A R S L T +
Sbjct: 364 YWDNSFKCFSTESGQSGCTRIATSPQPFLSCSLSFACLLAHRASVSLDLDTSK 416
>SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 268 LRSQKRNGIVLNFRTHEPAYPRSWLCAFSFPSIY 167
+R R I++ R+ A SW+ +F FPSIY
Sbjct: 127 VRPPHRGQILVTKRSVALAISSSWIFSFMFPSIY 160
>SB_165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 144 ILHVLVH-IEVQLPFGCVALIIYQLSNL*WRMVHLV 40
++H+++H +E++ + V LI++ L WRMVHL+
Sbjct: 310 MVHLILHDLELRC-WRMVQLILHDLELRCWRMVHLI 344
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 144 ILHVLVH-IEVQLPFGCVALIIYQLSNL*WRMVHLV 40
++H+++H +E++ + V LI++ L WRMVHL+
Sbjct: 280 MVHLILHDLELRC-WRMVHLILHDLELRCWRMVHLI 314
>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 284 VITNVVEVTEKEWHSTELSYA*TCISEILVMCLFVSVY 171
+I N + TE+++ S LSY S +L LF+ Y
Sbjct: 8 LINNAIYFTERQYRSAVLSYVTFTKSHLLSAILFLLCY 45
>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
Length = 351
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 252 LFCDLNDVCNYASRNDRSYWLST 320
LFCDL +C++ RND+ WLS+
Sbjct: 322 LFCDLERLCSF--RNDK--WLSS 340
>SB_33493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 231 FVRMNLHIRDLGYVPF-RFRLYIIANNRPIILHVLVHIEVQLPFGCVALIIYQL 73
F R L + L +PF R+RL ++ P + L +++++PF L + QL
Sbjct: 45 FTRYRLTVVQLR-IPFTRYRLTVVQLRIPFTRYRLTLVQLRIPFTRYRLTLVQL 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,083
Number of Sequences: 59808
Number of extensions: 214830
Number of successful extensions: 410
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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