Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I23
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72760.1 68414.m08413 protein kinase family protein contains ...    30   0.35 
At3g50120.1 68416.m05479 expressed protein contains Pfam profile...    29   0.81 
At1g47450.1 68414.m05260 expressed protein                             29   1.1  
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea...    28   1.9  
At3g06520.1 68416.m00756 agenet domain-containing protein contai...    28   1.9  
At2g27570.1 68415.m03340 sulfotransferase family protein similar...    27   3.3  
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    27   3.3  
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,...    27   4.3  
At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    27   4.3  
At1g31830.2 68414.m03909 amino acid permease family protein weak...    26   7.6  
At1g31830.1 68414.m03910 amino acid permease family protein weak...    26   7.6  
At4g03490.1 68417.m00476 ankyrin repeat family protein contains ...    25   10.0 
At3g45070.1 68416.m04858 sulfotransferase family protein similar...    25   10.0 
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea...    25   10.0 

>At1g72760.1 68414.m08413 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 697

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 117 PQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRK-FSTMPFLFCDL---NDVCNY 284
           PQC   HV+L D     + D  ++AH   L + G C RK       +  D+   N + NY
Sbjct: 43  PQCVLIHVQLGDTGGHFHQDNPDEAHEFFLPFRGFCARKGIIAKEVILHDIDISNAIVNY 102

Query: 285 ASRN 296
            + N
Sbjct: 103 ITNN 106


>At3g50120.1 68416.m05479 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function; expression
           supported by MPSS
          Length = 531

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 5   NRYYWKKWPTWPTRCTMRHYRLLN-WYIIS 91
           NRYY  KW  W  R T++H    N W I+S
Sbjct: 477 NRYYDHKWNAW--RATLKHKYFNNPWAIVS 504


>At1g47450.1 68414.m05260 expressed protein
          Length = 169

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +3

Query: 87  LVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYA----GSCVRK 233
           ++    RE++   +  H +L +G+S +Y+ GN  A ++D+ Y+      CVR+
Sbjct: 105 IINECCREILKMGKDCHFRLVEGWSAMYVYGNSIA-SKDIPYSKQSWNECVRR 156


>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 558

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 63  TDYLTGILLVRHSQREVVPQCEPGHVKLW 149
           T+ L+G++    +Q  VV  C  GH+K+W
Sbjct: 487 TEPLSGLMF---TQESVVTACREGHIKIW 512


>At3g06520.1 68416.m00756 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 466

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 265 RSQKRNGIVLNFRTHEPAYPRSWLCA 188
           R Q   G ++  R+ E AY  SW CA
Sbjct: 166 RDQYEKGALVEVRSEEKAYKGSWYCA 191



 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 280 LQTSLRSQK--RNGIVLNFRTHEPAYPRSWLCA 188
           L++  R++K   NG+ +  R+ EP Y  SW  A
Sbjct: 323 LKSCERAEKVFNNGMEVEVRSDEPGYEASWFSA 355


>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420006; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 273

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 277 QTSLRSQKRNGIVLNFRTHEPAYPRSWLCAFSFPSIYNSE*PSHNFTCP 131
           Q + + Q  N IV +F    P    +WL A +F  ++ S+ PSH+   P
Sbjct: 57  QKNFKPQDTNIIVASF----PKCGTTWLKALTFSLVHRSKHPSHDHHHP 101


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 183 EKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASR 293
           EKAH  D    G  VR+F T+ F   + ++  + ASR
Sbjct: 71  EKAHRLDPSSGGRGVRQFKTLLFQRLERDNASSLASR 107


>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase GI:7939617 from
           [Lycopersicon esculentum]
          Length = 887

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 57  ATTDYLTGILLVRHSQREVVPQCEPGHV 140
           +T DY+ G + +     EV   CE GHV
Sbjct: 779 STPDYINGTMSINSVAPEVHLHCEDGHV 806


>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 6/23 (26%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 68  ICSGAW-CTWWARWAISSSNTDF 3
           +C+  W C+WW+++  + + +D+
Sbjct: 41  VCTQGWECSWWSKYCCNQTISDY 63


>At1g31830.2 68414.m03909 amino acid permease family protein weak
           similarity to y+LAT1a (amino acid transporter) [Mus
           musculus] GI:3970791; contains Pfam profile PF00324:
           Amino acid permease
          Length = 479

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 59  GAWCTWWARWAISSSN 12
           GAW  WW + A ++SN
Sbjct: 290 GAWLRWWVQAAAATSN 305


>At1g31830.1 68414.m03910 amino acid permease family protein weak
           similarity to y+LAT1a (amino acid transporter) [Mus
           musculus] GI:3970791; contains Pfam profile PF00324:
           Amino acid permease
          Length = 495

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 59  GAWCTWWARWAISSSN 12
           GAW  WW + A ++SN
Sbjct: 306 GAWLRWWVQAAAATSN 321


>At4g03490.1 68417.m00476 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 587

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
 Frame = +3

Query: 135 HVKLWDGYSLLY----IDGNEKAHNQ 200
           H+KLW+ YSL++     DG +K ++Q
Sbjct: 561 HLKLWNHYSLVFSGHLYDGPKKTYSQ 586


>At3g45070.1 68416.m04858 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 323

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 277 QTSLRSQKRNGIVLNFRTHEPAYPRSWLCAFSFPSIYNSE*PSHN 143
           Q S + Q  + IV +F    P    +WL A +F  ++ S+ PSH+
Sbjct: 52  QKSFKPQDTDIIVASF----PKCGTTWLKALTFALLHRSKQPSHD 92


>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 544

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 63  TDYLTGILLVRHSQREVVPQCEPGHVKLW 149
           T+ L+G++    +Q  ++  C  GH+K+W
Sbjct: 488 TEPLSGLIF---TQESLITACREGHLKIW 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,257,235
Number of Sequences: 28952
Number of extensions: 141749
Number of successful extensions: 329
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)