Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I22
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 30 0.16
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 29 0.49
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 27 1.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.5
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 26 2.6
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 26 2.6
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 3.4
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 4.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 4.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 7.9
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 30.3 bits (65), Expect = 0.16
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 274 GLHEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHSWL 167
G H+FR N+G +R FL IF D + + ++L
Sbjct: 69 GYHQFRKNVGKEAKLRAFLPQIFGGDSWKLAIPAFL 104
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 28.7 bits (61), Expect = 0.49
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 77 FDVVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDVV 256
F VIGKDS + K + +K + YV P+ +I + +L EN K S V
Sbjct: 60 FGFVIGKDSSQISQKVAKSVNDLKKVIYVENPSYEHNIPDQIAN-VLFENVKKNEISHVF 118
Query: 257 TKFMETFKMGMLPR 298
+ T G++PR
Sbjct: 119 SAH-STVGKGVMPR 131
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 92 GKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYS 241
G SL+ A C+ LL+Y P++ + A EY+LE + +S
Sbjct: 369 GDTSLLIAARNGAMDCVNSLLSYNANPSIPNRQRRTASEYLLEADKKPHS 418
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 479 VRPVEDCSSESIYEHAPVNAFP*PASSFDEVVLSPWRS 366
+RPV+D SS+++Y + P + DE ++P+ S
Sbjct: 147 IRPVDDLSSKNMYIRSVTRVIT-PGTLIDENFMNPYES 183
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 170 PTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETF 277
PT+Y+D K V ++ +L D + V+ +M F
Sbjct: 379 PTIYDDYKFVTKKELLNLGLDHLVGTGVIRAYMHGF 414
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 268 HEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHS 173
H ++N R+ VFLQ F F D LVH+
Sbjct: 97 HRHKSNTFARLTAAVFLQKGFKTYFFDHLVHT 128
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 341 PVPFATHLCERRPHHAVACPF*RSP 267
PVPFAT L + PH + P +P
Sbjct: 123 PVPFATRLLQSTPHRQLFPPTPSTP 147
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 207 NICWRKTRTSTRNPMLLRNSWRPS 278
+IC KT T T+ M+ R W PS
Sbjct: 364 DICSDKTGTITQGKMITRRVWIPS 387
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 475 DLWKTAAVRAYTNMPPLMRSLN 410
DL V Y+N+PP +R+LN
Sbjct: 896 DLIDLLYVNGYSNLPPFVRALN 917
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 243 FEYLSVFSSSIYSLATSLMSSYTV 172
FEY+S S IY L +L+ YT+
Sbjct: 555 FEYVSRLSQYIYLLRIALVRLYTI 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,138
Number of Sequences: 5004
Number of extensions: 39114
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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