Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I22
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233...    30   0.85 
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    29   2.6  
12_02_0503 - 19756561-19757991,19758606-19759967                       27   6.0  
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687...    27   7.9  
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    27   7.9  

>01_06_0120 +
           26622285-26622433,26623156-26623219,26623310-26623399,
           26623588-26623644,26623832-26623880,26624320-26624396,
           26624918-26624957,26625037-26625131,26625525-26625689,
           26625777-26625887,26625971-26626058,26626715-26626781,
           26626955-26627063,26627155-26627272,26628345-26628590,
           26628956-26629095,26629262-26629444,26629560-26629679,
           26629932-26629967
          Length = 667

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 300 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQI 133
           P GSM I+    N    S  EY++V +  +IY L +++ S +  G S  F+SF++ +
Sbjct: 516 PDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGLVSAIDSIWVYGNS--FESFLVAV 570


>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
            23824124-23824322,23824410-23824495,23824940-23825098,
            23825204-23825302,23825385-23826578,23826666-23826734,
            23828042-23828812
          Length = 997

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 155  NYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV-VTKFMETFKMGMLPRGEVFVH 316
            N VL+P     I+ +ARE+M++    K    DV + KF +   M  L +    +H
Sbjct: 939  NIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMNELAQQAADLH 993


>12_02_0503 - 19756561-19757991,19758606-19759967
          Length = 930

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 235 VLEIR-CCYEIHGDLQNGHATAW*GL-RSHKC 324
           VL+I  CC E+HG+ Q+G  + W  + R H C
Sbjct: 894 VLDINGCCNELHGECQSG-GSEWSKICRIHSC 924


>11_06_0233 +
           21565233-21566053,21566840-21567890,21568075-21568758,
           21568927-21569019,21571815-21571835
          Length = 889

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 185 DIKEVAREYMLEENTDKYSKSDVVT 259
           DIK+V ++ ++E N D+Y   DV T
Sbjct: 232 DIKKVLKDILIEVNKDRYMVLDVST 256


>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
            40479205-40480047,40480176-40480269,40480356-40481207,
            40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 136  LHHETLELRTAANCVRGHQGSREGIYAGG 222
            LHH+ L+ +  AN +R H G  E  +  G
Sbjct: 1001 LHHDQLQSQQLANALRQHAGREEERHLSG 1029


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,093
Number of Sequences: 37544
Number of extensions: 272128
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)